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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-u.5   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-r.7   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-m.9   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-e.2   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-m.4.bio   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-m.4.hor   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-m.4.lig   AT3G15380   Plasma-membrane choline transporter family protein 
 ath-m.4.str   AT3G15380   Plasma-membrane choline transporter family protein 
 bra-r.6   103859621   choline transporter protein 1 
 bra-r.6   103869923   choline transporter protein 1 
 bna-r.1   106439411   choline transporter protein 1 
 bna-r.1   106406034   choline transporter protein 1 
 bna-r.1   106401142   choline transporter protein 1-like 
 ghi-r.1   107929789   choline transporter protein 1 
 ghi-r.1   107955678   choline transporter protein 1 
 ghi-r.1   107917955   choline transporter protein 1 
 cit-r.1   102619733   choline transporter protein 1 
 gma-u.5   100789185   choline transporter protein 1 
 gma-u.5   100779959   choline transporter protein 1 
 gma-u.5   100815939   choline transporter protein 1 
 vvi-u.5   100241764   choline transporter protein 1 
 ppo-u.5   7460829   choline transporter protein 1 
 mtr-u.5   25487357   choline transporter protein 1 
 mtr-u.5   25501237   choline transporter protein 1 
 sly-u.5   101253105   choline transporter protein 1 
 sot-r.1   102586600   choline transporter-like protein 2 
 nta-r.1   107804771   choline transporter protein 1 
 nta-r.1   107803658   choline transporter protein 1 
 osa-u.5   4337433   choline transporter protein 1 
 osa-u.5   4337431   choline transporter protein 1 
 zma-u.5   103654439   choline transporter protein 1 
 zma-u.5   103645752   choline transporter protein 1 
 tae-r.2   123147699   choline transporter protein 1 
 tae-r.2   123055251   choline transporter protein 1 
 tae-r.2   123164302   choline transporter protein 1 
 hvu-r.1   123428446   choline transporter protein 1-like 
 hvu-r.1   123409855   choline transporter protein 1-like 
 sbi-r.1   8064313   choline transporter protein 1 
 sbi-r.1   8076480   choline transporter protein 1 
 bdi-r.1   100828458   choline transporter protein 1 
 bdi-r.1   100821830   choline transporter protein 1 
 cre-r.1   CHLRE_01g021500v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G15380 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G15380 (ath-m.4.tis coexpression data)

CoexMap"820777"


athAT3G15380 | Entrez gene ID : 820777      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 1 1 2 1 1 2 2 2 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015871 [list] [network] choline transport  (1 genes)  IDA IMP  
GO:0090603 [list] [network] sieve element differentiation  (5 genes)  IMP  
GO:0009663 [list] [network] plasmodesma organization  (7 genes)  IMP  
GO:0030100 [list] [network] regulation of endocytosis  (7 genes)  IMP  
GO:0010067 [list] [network] procambium histogenesis  (10 genes)  IMP  
GO:0010497 [list] [network] plasmodesmata-mediated intercellular transport  (17 genes)  IMP  
GO:0010088 [list] [network] phloem development  (31 genes)  IMP  
GO:0055088 [list] [network] lipid homeostasis  (32 genes)  IMP  
GO:2000012 [list] [network] regulation of auxin polar transport  (39 genes)  IMP  
GO:0010051 [list] [network] xylem and phloem pattern formation  (69 genes)  IMP  
GO:0051510 [list] [network] regulation of unidimensional cell growth  (82 genes)  IMP  
GO:0050801 [list] [network] monoatomic ion homeostasis  (168 genes)  IMP  
GO:0015031 [list] [network] protein transport  (216 genes)  IMP  
GO:0016192 [list] [network] vesicle-mediated transport  (246 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0009551 [list] [network] secondary plasmodesma  (1 genes)  IMP  
GO:0097218 [list] [network] sieve plate  (4 genes)  IDA  
GO:0031901 [list] [network] early endosome membrane  (5 genes)  IDA  
GO:0032588 [list] [network] trans-Golgi network membrane  (16 genes)  IDA  
GO:0005769 [list] [network] early endosome  (26 genes)  IDA  
GO:0009524 [list] [network] phragmoplast  (72 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0055044 [list] [network] symplast  (874 genes)  IMP  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0015220 [list] [network] choline transmembrane transporter activity  (1 genes)  IDA  
Protein NP_566511.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  E.R. 3  (predict for NP_566511.1)
Subcellular
localization
TargetP
other 9,  mito 3  (predict for NP_566511.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
AT3G15380
ath-u.5
for
AT3G15380
ath-r.7
for
AT3G15380
ath-m.9
for
AT3G15380
ath-e.2
for
AT3G15380
ath-m.4.bio
for
AT3G15380
ath-m.4.hor
for
AT3G15380
ath-m.4.lig
for
AT3G15380
ath-m.4.str
for
AT3G15380
bra-r.6
for
103859621
bra-r.6
for
103869923
bna-r.1
for
106439411
bna-r.1
for
106406034
bna-r.1
for
106401142
ghi-r.1
for
107929789
ghi-r.1
for
107955678
ghi-r.1
for
107917955
cit-r.1
for
102619733
gma-u.5
for
100789185
gma-u.5
for
100779959
gma-u.5
for
100815939
vvi-u.5
for
100241764
ppo-u.5
for
7460829
mtr-u.5
for
25487357
mtr-u.5
for
25501237
sly-u.5
for
101253105
sot-r.1
for
102586600
nta-r.1
for
107804771
nta-r.1
for
107803658
osa-u.5
for
4337433
osa-u.5
for
4337431
zma-u.5
for
103654439
zma-u.5
for
103645752
tae-r.2
for
123147699
tae-r.2
for
123055251
tae-r.2
for
123164302
hvu-r.1
for
123428446
hvu-r.1
for
123409855
sbi-r.1
for
8064313
sbi-r.1
for
8076480
bdi-r.1
for
100828458
bdi-r.1
for
100821830
cre-r.1
for
CHLRE_01g021500v5


Ortholog ID: 4546
Species ath bra bra bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol AT3G15380 LOC103859621 LOC103869923 LOC106406034 LOC106401142 LOC107929789 LOC107917955 LOC107917771 LOC102619733 LOC100779959 LOC100815939 LOC100803501 LOC100241764 LOC7460829 LOC25487357 LOC25501237 LOC101253105 LOC102586600 LOC107804771 LOC107803658 LOC4337433 LOC4337431 LOC103654439 LOC103645752 LOC123191084 LOC123047450 LOC123160396 LOC123428446 LOC123409855 LOC8064313 LOC8076480 LOC100828458 LOC100821830 CHLRE_01g021500v5
Function* Plasma-membrane choline transporter family protein choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1-like choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter-like protein 2 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1-like choline transporter protein 1-like choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 choline transporter protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00460 Cyanoamino acid metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00460 Cyanoamino acid metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00460 Cyanoamino acid metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04016 MAPK signaling pathway - plant 2
cre04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820777 103859621 103869923 106406034 106401142 107929789 107917955 107917771 102619733 100779959 100815939 100803501 100241764 7460829 25487357 25501237 101253105 102586600 107804771 107803658 4337433 4337431 103654439 103645752 123191084 123047450 123160396 123428446 123409855 8064313 8076480 100828458 100821830 5715212
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