ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100815939	choline transporter protein 1
gma-r.7	100815939	choline transporter protein 1
gma-m.5	100815939	choline transporter protein 1
gma-u.5	100803501	choline transporter protein 1
gma-u.5	100779959	choline transporter protein 1
gma-u.5	100789185	choline transporter protein 1
mtr-u.5	25487357	choline transporter protein 1
mtr-u.5	25501237	choline transporter protein 1
ppo-u.5	7460829	choline transporter protein 1
ath-u.5	AT3G15380	Plasma-membrane choline transporter family protein
vvi-u.5	100241764	choline transporter protein 1
sly-u.5	101253105	choline transporter protein 1
osa-u.5	4337433	choline transporter protein 1
osa-u.5	4337431	choline transporter protein 1
zma-u.5	103654439	choline transporter protein 1
zma-u.5	103645752	choline transporter protein 1

Annotation

functional annotation

KEGG

GO BP

GO:0055085 [list] [network] transmembrane transport

(1780 genes)

IEA

GO CC

GO MF

GO:0022857 [list] [network] transmembrane transporter activity

(2160 genes)

IEA

Protein

XP_003540093.1 [sequence] [blastp]
XP_040863196.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, E.R. 2	(predict for XP_003540093.1)
plas 6, E.R. 3, nucl_plas 3, cysk_plas 3, mito_plas 3, cyto_plas 3	(predict for XP_040863196.1)

Subcellular
localization
TargetP

other 9, mito 3	(predict for XP_003540093.1)
other 9, mito 3	(predict for XP_040863196.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100815939	gma-r.7 for 100815939	gma-m.5 for 100815939	gma-u.5 for 100803501	gma-u.5 for 100779959	gma-u.5 for 100789185	mtr-u.5 for 25487357	mtr-u.5 for 25501237	ppo-u.5 for 7460829	ath-u.5 for AT3G15380	vvi-u.5 for 100241764	sly-u.5 for 101253105	osa-u.5 for 4337433	osa-u.5 for 4337431	zma-u.5 for 103654439	zma-u.5 for 103645752

Ortholog

Ortholog ID: 4546

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

choline transporter protein 1

Plasma-membrane choline transporter family protein

choline transporter protein 1

choline transporter protein 1-like

choline transporter protein 1

choline transporter-like protein 2

choline transporter protein 1

choline transporter protein 1-like

choline transporter protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00460	Cyanoamino acid metabolism	2
gma00500	Starch and sucrose metabolism	2
gma00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00220	Arginine biosynthesis	2
bra00250	Alanine, aspartate and glutamate metabolism	2
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	4
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04016	MAPK signaling pathway - plant	2
cre04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100815939

100803501

25501237

25487357

7460829

820777

103859621

103869923

100241764

107917955

107929789

106401142

106406034

102619733

101253105

102586600

107803658

107804771

4337431

4337433

103654439

103645752

123047450

123191084

123428446

123409855

8064313

8076480

100828458

100821830

5715212

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100815939 (gma-u.5 coexpression data)

Top 50 enrichment test to 100815939 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	2	1	1	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100815939 (gma-u.5 coexpression data)

Top 50 enrichment test to 100815939 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**