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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   VAR1   FtsH extracellular protease family 
 ath-u.5   VAR1   FtsH extracellular protease family 
 ath-r.7   VAR1   FtsH extracellular protease family 
 ath-m.9   VAR1   FtsH extracellular protease family 
 ath-e.2   VAR1   FtsH extracellular protease family 
 ath-m.4.bio   VAR1   FtsH extracellular protease family 
 ath-m.4.hor   VAR1   FtsH extracellular protease family 
 ath-m.4.lig   VAR1   FtsH extracellular protease family 
 ath-m.4.str   VAR1   FtsH extracellular protease family 
 ath-u.5   FTSH1   FTSH protease 1 
 bra-r.6   103831194   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 bna-r.1   111199397   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 
 bna-r.1   106353966   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 ghi-r.1   107922073   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ghi-r.1   107917971   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ghi-r.1   107905659   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 cit-r.1   102607431   ATP-dependent zinc metalloprotease FTSH 5, chloroplastic 
 gma-u.5   100807408   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 gma-u.5   100803824   ATP-dependent zinc metalloprotease FTSH, chloroplastic-like 
 vvi-u.5   100250509   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7496874   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7494681   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 mtr-u.5   25490290   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 sly-u.5   100037730   FtsH-like protein precursor 
 sot-r.1   102591510   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 nta-r.1   107831424   ATP-dependent zinc metalloprotease FTSH, chloroplastic-like 
 nta-r.1   107816214   ATP-dependent zinc metalloprotease FTSH, chloroplastic-like 
 nta-r.1   107805643   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 osa-u.5   4342113   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 
 zma-u.5   100502422   uncharacterized LOC100502422 
 tae-r.2   123168509   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 tae-r.2   123162610   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 tae-r.2   123149765   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 hvu-r.1   123408493   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 sbi-r.1   110431051   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 bdi-r.1   100842727   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic 
 cre-r.1   CHLRE_12g485800v5   uncharacterized protein 

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Top 50 coexpressed genes to VAR1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VAR1 (ath-m.4.tis coexpression data)

CoexMap"834232"


athVAR1 | Entrez gene ID : 834232      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 2 3 1 2 1 2 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (8 genes)  TAS  
GO:0010205 [list] [network] photoinhibition  (11 genes)  IMP  
GO:0048564 [list] [network] photosystem I assembly  (17 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (264 genes)  IDA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (19 genes)  ISS  
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568604.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_568604.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_568604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
VAR1
ath-u.5
for
VAR1
ath-r.7
for
VAR1
ath-m.9
for
VAR1
ath-e.2
for
VAR1
ath-m.4.bio
for
VAR1
ath-m.4.hor
for
VAR1
ath-m.4.lig
for
VAR1
ath-m.4.str
for
VAR1
ath-u.5
for
FTSH1
bra-r.6
for
103831194
bna-r.1
for
111199397
bna-r.1
for
106353966
ghi-r.1
for
107922073
ghi-r.1
for
107917971
ghi-r.1
for
107905659
cit-r.1
for
102607431
gma-u.5
for
100807408
gma-u.5
for
100803824
vvi-u.5
for
100250509
ppo-u.5
for
7496874
ppo-u.5
for
7494681
mtr-u.5
for
25490290
sly-u.5
for
100037730
sot-r.1
for
102591510
nta-r.1
for
107831424
nta-r.1
for
107816214
nta-r.1
for
107805643
osa-u.5
for
4342113
zma-u.5
for
100502422
tae-r.2
for
123168509
tae-r.2
for
123162610
tae-r.2
for
123149765
hvu-r.1
for
123408493
sbi-r.1
for
110431051
bdi-r.1
for
100842727
cre-r.1
for
CHLRE_12g485800v5


Ortholog ID: 7744
Species ath ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol VAR1 FTSH1 LOC103831194 LOC111199397 LOC106353966 LOC107922073 LOC107917971 LOC107905659 LOC102607431 LOC100807408 LOC100803824 LOC100250509 LOC7496874 LOC7494681 LOC25490290 LOC100037730 LOC102591510 LOC107831424 LOC107816214 LOC4342113 LOC100502422 LOC123168509 LOC123162610 LOC123149765 LOC123408493 LOC110431051 LOC100842727 CHLRE_12g485800v5
Function* FtsH extracellular protease family FTSH protease 1 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH 5, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic FtsH-like protein precursor ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like uncharacterized LOC100502422 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
ghi00561 Glycerolipid metabolism 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834232 841447 103831194 111199397 106353966 107922073 107917971 107905659 102607431 100807408 100803824 100250509 7496874 7494681 25490290 100037730 102591510 107831424 107816214 4342113 100502422 123168509 123162610 123149765 123408493 110431051 100842727 5716615
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