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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g485800v5   uncharacterized protein 
 ath-u.5   VAR1   FtsH extracellular protease family 
 ath-u.5   FTSH1   FTSH protease 1 
 gma-u.5   100807408   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 gma-u.5   100803824   ATP-dependent zinc metalloprotease FTSH, chloroplastic-like 
 sly-u.5   100037730   FtsH-like protein precursor 
 osa-u.5   4342113   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 
 zma-u.5   100502422   uncharacterized LOC100502422 
 vvi-u.5   100250509   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7496874   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7494681   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 mtr-u.5   25490290   ATP-dependent zinc metalloprotease FTSH, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g485800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g485800v5 (cre-r.1 coexpression data)

CoexMap"5716615"


creCHLRE_12g485800v5 | Entrez gene ID : 5716615      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006508 [list] [network] proteolysis  (404 genes)  IEA  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (62 genes)  IEA  
GO:0016020 [list] [network] membrane  (1543 genes)  IEA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (22 genes)  IEA  
GO:0004222 [list] [network] metalloendopeptidase activity  (42 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001690889.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_001690889.1)
Subcellular
localization
TargetP
mito 6,  chlo 4  (predict for XP_001690889.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g485800v5

.
ath-u.5
for
VAR1

.
ath-u.5
for
FTSH1

.
gma-u.5
for
100807408

.
gma-u.5
for
100803824

.
sly-u.5
for
100037730

.
osa-u.5
for
4342113

.
zma-u.5
for
100502422

.
vvi-u.5
for
100250509

.
ppo-u.5
for
7496874

.
ppo-u.5
for
7494681

.
mtr-u.5
for
25490290

.


Ortholog ID: 7744
Species ath ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol VAR1 FTSH1 LOC100803824 LOC100807408 LOC100037730 LOC4342113 LOC100502422 LOC103831194 LOC100250509 LOC7494681 LOC7496874 LOC25490290 LOC123149765 LOC123162610 LOC123408493 LOC107905659 LOC107917971 LOC106353966 LOC111199397 CHLRE_12g485800v5 LOC110431051 LOC102591510 LOC102607431 LOC100842727 LOC107816214 LOC107831424
Function* FtsH extracellular protease family FTSH protease 1 ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic FtsH-like protein precursor ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like uncharacterized LOC100502422 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like uncharacterized protein ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH 5, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834232 841447 100803824 100807408 100037730 4342113 100502422 103831194 100250509 7494681 7496874 25490290 123149765 123162610 123408493 107905659 107917971 106353966 111199397 5716615 110431051 102591510 102607431 100842727 107816214 107831424
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