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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   NPH3   Phototropic-responsive NPH3 family protein 
 ath-u.5   NPH3   Phototropic-responsive NPH3 family protein 
 ath-r.7   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.9   NPH3   Phototropic-responsive NPH3 family protein 
 ath-e.2   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.bio   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.hor   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.lig   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.str   NPH3   Phototropic-responsive NPH3 family protein 
 bra-r.6   103873855   root phototropism protein 3 
 bra-r.6   103837524   root phototropism protein 3 
 bna-r.1   106403063   root phototropism protein 3-like 
 bna-r.1   106371747   root phototropism protein 3-like 
 bna-r.1   106426665   root phototropism protein 3 
 ghi-r.1   107908937   root phototropism protein 3 
 ghi-r.1   121221509   root phototropism protein 3 
 ghi-r.1   107930749   root phototropism protein 3 
 cit-r.1   102621179   root phototropism protein 3 
 gma-u.5   100820028   root phototropism protein 3 
 gma-u.5   100815459   root phototropism protein 3 
 gma-u.5   100810791   root phototropism protein 3 
 ppo-u.5   7472513   root phototropism protein 3 
 ppo-u.5   7485049   root phototropism protein 3 
 mtr-u.5   11413369   root phototropism protein 3 
 mtr-u.5   11428537   root phototropism protein 3 
 sly-u.5   101267854   root phototropism protein 3 
 sly-u.5   101246384   root phototropism protein 3-like 
 sot-r.1   102595778   root phototropism protein 3-like 
 sot-r.1   102603903   root phototropism protein 3 
 nta-r.1   107812219   root phototropism protein 3 
 nta-r.1   107794853   root phototropism protein 3 
 nta-r.1   107791534   root phototropism protein 3-like 
 osa-u.5   4329720   coleoptile phototropism protein 1-like 
 zma-u.5   103646846   coleoptile phototropism protein 1 
 zma-u.5   100281161   uncharacterized LOC100281161 
 tae-r.2   123143506   coleoptile phototropism protein 1 
 tae-r.2   123136056   coleoptile phototropism protein 1 
 tae-r.2   123131985   coleoptile phototropism protein 1 
 hvu-r.1   123404759   coleoptile phototropism protein 1 
 sbi-r.1   8080295   coleoptile phototropism protein 1 
 sbi-r.1   8068928   coleoptile phototropism protein 1 
 bdi-r.1   100831661   coleoptile phototropism protein 1 

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Top 50 coexpressed genes to NPH3 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NPH3 (ath-m.4.tis coexpression data)

CoexMap"836554"


athNPH3 | Entrez gene ID : 836554      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi vvi cre
Paralog 9 2 3 3 1 3 2 2 2 2 3 1 2 3 1 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  IGI IPI  
GO:0009638 [list] [network] phototropism  (26 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM NAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318873.1 [sequence] [blastp]
NP_001330808.1 [sequence] [blastp]
NP_568989.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001318873.1)
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001330808.1)
nucl 8,  cyto 2  (predict for NP_568989.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001318873.1)
mito 4,  other 3  (predict for NP_001330808.1)
other 9  (predict for NP_568989.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
NPH3
ath-u.5
for
NPH3
ath-r.7
for
NPH3
ath-m.9
for
NPH3
ath-e.2
for
NPH3
ath-m.4.bio
for
NPH3
ath-m.4.hor
for
NPH3
ath-m.4.lig
for
NPH3
ath-m.4.str
for
NPH3
bra-r.6
for
103873855
bra-r.6
for
103837524
bna-r.1
for
106403063
bna-r.1
for
106371747
bna-r.1
for
106426665
ghi-r.1
for
107908937
ghi-r.1
for
121221509
ghi-r.1
for
107930749
cit-r.1
for
102621179
gma-u.5
for
100820028
gma-u.5
for
100815459
gma-u.5
for
100810791
ppo-u.5
for
7472513
ppo-u.5
for
7485049
mtr-u.5
for
11413369
mtr-u.5
for
11428537
sly-u.5
for
101267854
sly-u.5
for
101246384
sot-r.1
for
102595778
sot-r.1
for
102603903
nta-r.1
for
107812219
nta-r.1
for
107794853
nta-r.1
for
107791534
osa-u.5
for
4329720
zma-u.5
for
103646846
zma-u.5
for
100281161
tae-r.2
for
123143506
tae-r.2
for
123136056
tae-r.2
for
123131985
hvu-r.1
for
123404759
sbi-r.1
for
8080295
sbi-r.1
for
8068928
bdi-r.1
for
100831661


Ortholog ID: 5003
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi sbi bdi
Symbol NPH3 LOC103873855 LOC103837524 LOC106371747 LOC106426665 LOC106348061 LOC107908937 LOC107930749 LOC107918420 LOC102621179 LOC100820028 LOC100810791 LOC100790848 LOC7472513 LOC7485049 LOC11413369 LOC11428537 LOC101267854 LOC101246384 LOC102595778 LOC102603903 LOC107812219 LOC107794853 LOC107774889 LOC4329720 LOC103646846 LOC100281161 LOC123143506 LOC123136056 LOC123131985 LOC123404759 LOC8080295 LOC8068928 LOC100831661
Function* Phototropic-responsive NPH3 family protein root phototropism protein 3 root phototropism protein 3 root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3-like root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3-like coleoptile phototropism protein 1-like coleoptile phototropism protein 1 uncharacterized LOC100281161 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 3
gma04981 Folate transport and metabolism 3
gma00062 Fatty acid elongation 3
gma04626 Plant-pathogen interaction 3
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 4
gma04626 Plant-pathogen interaction 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00053 Ascorbate and aldarate metabolism 2
gma00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
zma02010 ABC transporters 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 2
tae04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00904 Diterpenoid biosynthesis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836554 103873855 103837524 106371747 106426665 106348061 107908937 107930749 107918420 102621179 100820028 100810791 100790848 7472513 7485049 11413369 11428537 101267854 101246384 102595778 102603903 107812219 107794853 107774889 4329720 103646846 100281161 123143506 123136056 123131985 123404759 8080295 8068928 100831661
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