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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NPH3   Phototropic-responsive NPH3 family protein 
 ath-r.7   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.9   NPH3   Phototropic-responsive NPH3 family protein 
 ath-e.2   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.bio   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.hor   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.lig   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.str   NPH3   Phototropic-responsive NPH3 family protein 
 ath-m.4.tis   NPH3   Phototropic-responsive NPH3 family protein 
 gma-u.5   100820028   root phototropism protein 3 
 gma-u.5   100815459   root phototropism protein 3 
 gma-u.5   100810791   root phototropism protein 3 
 ppo-u.5   7472513   root phototropism protein 3 
 ppo-u.5   7485049   root phototropism protein 3 
 mtr-u.5   11413369   root phototropism protein 3 
 mtr-u.5   11428537   root phototropism protein 3 
 sly-u.5   101267854   root phototropism protein 3 
 sly-u.5   101246384   root phototropism protein 3-like 
 osa-u.5   4329720   coleoptile phototropism protein 1-like 
 zma-u.5   103646846   coleoptile phototropism protein 1 
 zma-u.5   100281161   uncharacterized LOC100281161 

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Top 50 coexpressed genes to NPH3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NPH3 (ath-u.5 coexpression data)

CoexMap"836554"


athNPH3 | Entrez gene ID : 836554      
Species ath gma ppo mtr sly osa zma bdi hvu bra vvi cit bna sbi ghi sot nta cre tae
Paralog 9 3 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  IGI IPI  
GO:0009638 [list] [network] phototropism  (26 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM NAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318873.1 [sequence] [blastp]
NP_001330808.1 [sequence] [blastp]
NP_568989.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001318873.1)
chlo 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001330808.1)
nucl 8,  cyto 2  (predict for NP_568989.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001318873.1)
mito 4,  other 3  (predict for NP_001330808.1)
other 9  (predict for NP_568989.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NPH3
ath-r.7
for
NPH3
ath-m.9
for
NPH3
ath-e.2
for
NPH3
ath-m.4.bio
for
NPH3
ath-m.4.hor
for
NPH3
ath-m.4.lig
for
NPH3
ath-m.4.str
for
NPH3
ath-m.4.tis
for
NPH3
gma-u.5
for
100820028
gma-u.5
for
100815459
gma-u.5
for
100810791
ppo-u.5
for
7472513
ppo-u.5
for
7485049
mtr-u.5
for
11413369
mtr-u.5
for
11428537
sly-u.5
for
101267854
sly-u.5
for
101246384
osa-u.5
for
4329720
zma-u.5
for
103646846
zma-u.5
for
100281161


Ortholog ID: 5003
Species ath bra bra bna bna ghi ghi cit gma gma ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi sbi bdi
Symbol NPH3 LOC103873855 LOC103837524 LOC106348061 LOC106426665 LOC107908937 LOC107918420 LOC102621179 LOC100810791 LOC100820028 LOC7485049 LOC7472513 LOC11413369 LOC11428537 LOC101267854 LOC101246384 LOC102603903 LOC102595778 LOC107812219 LOC107794853 LOC4329720 LOC100281161 LOC103646846 LOC123136056 LOC123131985 LOC123404759 LOC8068928 LOC8080295 LOC100831661
Function* Phototropic-responsive NPH3 family protein root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3 root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3-like root phototropism protein 3 root phototropism protein 3 coleoptile phototropism protein 1-like uncharacterized LOC100281161 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1 coleoptile phototropism protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 3
gma04981 Folate transport and metabolism 3
gma00062 Fatty acid elongation 3
gma04626 Plant-pathogen interaction 3
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
zma02010 ABC transporters 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 2
tae04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00904 Diterpenoid biosynthesis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836554 103873855 103837524 106348061 106426665 107908937 107918420 102621179 100810791 100820028 7485049 7472513 11413369 11428537 101267854 101246384 102603903 102595778 107812219 107794853 4329720 100281161 103646846 123136056 123131985 123404759 8068928 8080295 100831661
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