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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   LINC1   little nuclei1 
 ath-u.5   LINC1   little nuclei1 
 ath-r.7   LINC1   little nuclei1 
 ath-m.9   LINC1   little nuclei1 
 ath-e.2   LINC1   little nuclei1 
 ath-m.4.bio   LINC1   little nuclei1 
 ath-m.4.hor   LINC1   little nuclei1 
 ath-m.4.lig   LINC1   little nuclei1 
 ath-m.4.str   LINC1   little nuclei1 
 ath-u.5   LINC2   nuclear matrix constituent protein-like protein 
 ath-u.5   LINC3   little nuclei3 
 bra-r.6   103852523   protein CROWDED NUCLEI 3 
 bra-r.6   103852383   protein CROWDED NUCLEI 1 
 bra-r.6   103831155   protein CROWDED NUCLEI 1 
 bna-r.1   106391961   protein CROWDED NUCLEI 1 
 bna-r.1   106393324   protein CROWDED NUCLEI 3-like 
 bna-r.1   106346438   protein CROWDED NUCLEI 2 
 ghi-r.1   107946462   protein CROWDED NUCLEI 2 
 ghi-r.1   107934791   protein CROWDED NUCLEI 2 
 ghi-r.1   107916647   protein CROWDED NUCLEI 1 
 cit-r.1   102617982   nuclear matrix constituent protein 1 
 cit-r.1   102625465   protein CROWDED NUCLEI 1 
 gma-u.5   100805888   protein CROWDED NUCLEI 2 
 gma-u.5   100816589   protein CROWDED NUCLEI 3 
 vvi-u.5   100248029   nuclear matrix constituent protein 1 
 vvi-u.5   100242259   nuclear matrix constituent protein 1 
 ppo-u.5   7485949   nuclear matrix constituent protein 1 
 ppo-u.5   18107408   protein CROWDED NUCLEI 1 
 mtr-u.5   25495346   protein CROWDED NUCLEI 3 
 mtr-u.5   25497658   protein CROWDED NUCLEI 1 
 sly-u.5   101264275   nuclear matrix constituent protein 1 
 sly-u.5   101255471   nuclear matrix constituent protein 1-like 
 sot-r.1   102581630   protein CROWDED NUCLEI 1-like 
 sot-r.1   102583890   protein CROWDED NUCLEI 1-like 
 nta-r.1   107778685   nuclear matrix constituent protein 1 
 nta-r.1   107766477   nuclear matrix constituent protein 1-like 
 nta-r.1   107770458   nuclear matrix constituent protein 1 
 osa-u.5   4330487   protein CROWDED NUCLEI 1 
 zma-u.5   103653975   protein CROWDED NUCLEI 1 
 tae-r.2   123137957   nuclear matrix constituent protein 1a 
 tae-r.2   123145256   nuclear matrix constituent protein 1a 
 tae-r.2   123128155   nuclear matrix constituent protein 1a 
 hvu-r.1   123401394   nuclear matrix constituent protein 1a 
 sbi-r.1   110434435   protein CROWDED NUCLEI 1 
 bdi-r.1   100829196   protein CROWDED NUCLEI 1 

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Top 50 coexpressed genes to LINC1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LINC1 (ath-m.4.tis coexpression data)

CoexMap"843043"


athLINC1 | Entrez gene ID : 843043      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 2 2 2 2 2 2 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0097298 [list] [network] regulation of nucleus size  (4 genes)  IMP  
GO:0006997 [list] [network] nucleus organization  (51 genes)  IEA IGI IMP  
GO CC
GO:0005652 [list] [network] nuclear lamina  (2 genes)  IDA  
GO:0035861 [list] [network] site of double-strand break  (3 genes)  IDA  
GO:0034399 [list] [network] nuclear periphery  (8 genes)  IDA  
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0000785 [list] [network] chromatin  (140 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA IEA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176892.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for NP_176892.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_176892.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
LINC1
ath-u.5
for
LINC1
ath-r.7
for
LINC1
ath-m.9
for
LINC1
ath-e.2
for
LINC1
ath-m.4.bio
for
LINC1
ath-m.4.hor
for
LINC1
ath-m.4.lig
for
LINC1
ath-m.4.str
for
LINC1
ath-u.5
for
LINC2
ath-u.5
for
LINC3
bra-r.6
for
103852523
bra-r.6
for
103852383
bra-r.6
for
103831155
bna-r.1
for
106391961
bna-r.1
for
106393324
bna-r.1
for
106346438
ghi-r.1
for
107946462
ghi-r.1
for
107934791
ghi-r.1
for
107916647
cit-r.1
for
102617982
cit-r.1
for
102625465
gma-u.5
for
100805888
gma-u.5
for
100816589
vvi-u.5
for
100248029
vvi-u.5
for
100242259
ppo-u.5
for
7485949
ppo-u.5
for
18107408
mtr-u.5
for
25495346
mtr-u.5
for
25497658
sly-u.5
for
101264275
sly-u.5
for
101255471
sot-r.1
for
102581630
sot-r.1
for
102583890
nta-r.1
for
107778685
nta-r.1
for
107766477
nta-r.1
for
107770458
osa-u.5
for
4330487
zma-u.5
for
103653975
tae-r.2
for
123137957
tae-r.2
for
123145256
tae-r.2
for
123128155
hvu-r.1
for
123401394
sbi-r.1
for
110434435
bdi-r.1
for
100829196


Ortholog ID: 3513
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LINC1 LINC2 LINC3 LOC103852383 LOC103831155 LOC103871951 LOC106353927 LOC106357605 LOC106401090 LOC107946462 LOC107934791 LOC107916647 LOC102617982 LOC102625465 LOC100805888 LOC100803601 LOC100802673 LOC100248029 LOC100242259 LOC7485949 LOC18107408 LOC25495346 LOC25497658 LOC101264275 LOC101255471 LOC102581630 LOC102583890 LOC107778685 LOC107770458 LOC107793731 LOC4330487 LOC103653975 LOC123137957 LOC123145256 LOC123128155 LOC123401394 LOC110434435 LOC100829196
Function* little nuclei1 nuclear matrix constituent protein-like protein little nuclei3 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1-like protein CROWDED NUCLEI 3 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 3 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1-like protein CROWDED NUCLEI 1-like protein CROWDED NUCLEI 1-like nuclear matrix constituent protein 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1a nuclear matrix constituent protein 1a nuclear matrix constituent protein 1a nuclear matrix constituent protein 1a protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00310 Lysine degradation 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843043 837882 843210 103852383 103831155 103871951 106353927 106357605 106401090 107946462 107934791 107916647 102617982 102625465 100805888 100803601 100802673 100248029 100242259 7485949 18107408 25495346 25497658 101264275 101255471 102581630 102583890 107778685 107770458 107793731 4330487 103653975 123137957 123145256 123128155 123401394 110434435 100829196
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