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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106346438   protein CROWDED NUCLEI 2 
 ath-u.5   LINC2   nuclear matrix constituent protein-like protein 
 ath-u.5   LINC1   little nuclei1 
 ath-u.5   LINC3   little nuclei3 
 gma-u.5   100803601   protein CROWDED NUCLEI 1 
 gma-u.5   100816589   protein CROWDED NUCLEI 3 
 gma-u.5   100805888   protein CROWDED NUCLEI 2 
 vvi-u.5   100248029   nuclear matrix constituent protein 1 
 vvi-u.5   100242259   nuclear matrix constituent protein 1 
 ppo-u.5   7485949   nuclear matrix constituent protein 1 
 ppo-u.5   18107408   protein CROWDED NUCLEI 1 
 mtr-u.5   25495346   protein CROWDED NUCLEI 3 
 mtr-u.5   25497658   protein CROWDED NUCLEI 1 
 sly-u.5   101264275   nuclear matrix constituent protein 1 
 sly-u.5   101255471   nuclear matrix constituent protein 1-like 
 osa-u.5   4330487   protein CROWDED NUCLEI 1 
 zma-u.5   103653975   protein CROWDED NUCLEI 1 

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Top 50 coexpressed genes to 106346438 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106346438 (bna-r.1 coexpression data)

CoexMap"106346438"


bnaLOC106346438 | Entrez gene ID : 106346438    
Species bna ath gma vvi ppo mtr sly osa zma nta tae bdi sot bra sbi hvu cit cre ghi
Paralog 1 3 3 2 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006997 [list] [network] nucleus organization  (51 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013641222.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_013641222.2)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for XP_013641222.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106346438

.
ath-u.5
for
LINC2

.
ath-u.5
for
LINC1

.
ath-u.5
for
LINC3

.
gma-u.5
for
100803601

.
gma-u.5
for
100816589

.
gma-u.5
for
100805888

.
vvi-u.5
for
100248029

.
vvi-u.5
for
100242259

.
ppo-u.5
for
7485949

.
ppo-u.5
for
18107408

.
mtr-u.5
for
25495346

.
mtr-u.5
for
25497658

.
sly-u.5
for
101264275

.
sly-u.5
for
101255471

.
osa-u.5
for
4330487

.
zma-u.5
for
103653975

.


Ortholog ID: 3513
Species ath ath gma gma sly sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol LINC1 LINC3 LOC100805888 LOC100803601 LOC101255471 LOC101264275 LOC4330487 LOC103653975 LOC103852383 LOC103831155 LOC100242259 LOC100248029 LOC18107408 LOC7485949 LOC25495346 LOC25497658 LOC123145256 LOC123128155 LOC123401394 LOC107934791 LOC107916647 LOC106353927 LOC106401090 LOC110434435 LOC102583890 LOC102581630 LOC102617982 LOC102625465 LOC100829196 LOC107793731 LOC107770458
Function* little nuclei1 little nuclei3 protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1-like nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 protein CROWDED NUCLEI 3 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1a nuclear matrix constituent protein 1a nuclear matrix constituent protein 1a protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1-like protein CROWDED NUCLEI 2 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1-like protein CROWDED NUCLEI 1-like nuclear matrix constituent protein 1 protein CROWDED NUCLEI 1 protein CROWDED NUCLEI 1 nuclear matrix constituent protein 1 nuclear matrix constituent protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00310 Lysine degradation 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843043 843210 100805888 100803601 101255471 101264275 4330487 103653975 103852383 103831155 100242259 100248029 18107408 7485949 25495346 25497658 123145256 123128155 123401394 107934791 107916647 106353927 106401090 110434435 102583890 102581630 102617982 102625465 100829196 107793731 107770458
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