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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   SLK3   SEUSS-like 3 
 ath-u.5   SLK3   SEUSS-like 3 
 ath-e.2   SLK3   SEUSS-like 3 
 ath-u.5   SLK1   SEUSS-like 1 
 ath-u.5   SLK2   SEUSS-like 2 
 bra-r.6   103861563   probable transcriptional regulator SLK1 
 bra-r.6   103854973   probable transcriptional regulator SLK2 
 bna-r.1   106411168   probable transcriptional regulator SLK1 
 bna-r.1   106382770   probable transcriptional regulator SLK2 
 bna-r.1   106361335   probable transcriptional regulator SLK1 
 ghi-r.1   121203502   probable transcriptional regulator SLK2 
 ghi-r.1   107909080   probable transcriptional regulator SLK2 
 ghi-r.1   107904618   probable transcriptional regulator SLK2 
 cit-r.1   102621625   probable transcriptional regulator SLK2 
 gma-u.5   547529   probable transcriptional regulator SLK2 
 gma-u.5   100816886   probable transcriptional regulator SLK2 
 gma-u.5   100789452   probable transcriptional regulator SLK2 
 vvi-u.5   100265879   probable transcriptional regulator SLK2 
 vvi-u.5   100254797   probable transcriptional regulator SLK2 
 ppo-u.5   7454480   probable transcriptional regulator SLK2 
 ppo-u.5   18103960   probable transcriptional regulator SLK2 
 mtr-u.5   120575899   probable transcriptional regulator SLK2 
 sly-u.5   SEU2   transcriptional corepressor SEU2 
 sot-r.1   102584857   probable transcriptional regulator SLK2 
 nta-r.1   107811376   putative transcriptional regulator SLK2 
 nta-r.1   107770245   putative transcriptional regulator SLK2 
 nta-r.1   107797288   putative transcriptional regulator SLK2 
 osa-u.5   4339967   probable transcriptional regulator SLK3 
 zma-u.5   100502315   uncharacterized LOC100502315 
 zma-u.5   100383356   putative transcriptional regulator SLK2 
 zma-u.5   100280226   uncharacterized LOC100280226 
 tae-r.2   123088304   probable transcriptional regulator SLK3 
 tae-r.2   123149570   probable transcriptional regulator SLK2 
 tae-r.2   123148417   probable transcriptional regulator SLK3 
 hvu-r.1   123413641   probable transcriptional regulator SLK3 
 hvu-r.1   123413483   probable transcriptional regulator SLK3 
 hvu-r.1   123412891   probable transcriptional regulator SLK2 
 sbi-r.1   8081171   probable transcriptional regulator SLK2 
 sbi-r.1   110431238   probable transcriptional regulator SLK2 
 bdi-r.1   100842018   probable transcriptional regulator SLK3 

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Top 50 coexpressed genes to SLK3 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SLK3 (ath-r.7 coexpression data)

CoexMap"828656"


athSLK3 | Entrez gene ID : 828656      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 2 3 3 1 3 2 2 1 1 1 3 1 3 3 3 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_680741.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4,  E.R. 1,  pero 1  (predict for NP_680741.5)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for NP_680741.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
SLK3
ath-u.5
for
SLK3
ath-e.2
for
SLK3
ath-u.5
for
SLK1
ath-u.5
for
SLK2
bra-r.6
for
103861563
bra-r.6
for
103854973
bna-r.1
for
106411168
bna-r.1
for
106382770
bna-r.1
for
106361335
ghi-r.1
for
121203502
ghi-r.1
for
107909080
ghi-r.1
for
107904618
cit-r.1
for
102621625
gma-u.5
for
547529
gma-u.5
for
100816886
gma-u.5
for
100789452
vvi-u.5
for
100265879
vvi-u.5
for
100254797
ppo-u.5
for
7454480
ppo-u.5
for
18103960
mtr-u.5
for
120575899
sly-u.5
for
SEU2
sot-r.1
for
102584857
nta-r.1
for
107811376
nta-r.1
for
107770245
nta-r.1
for
107797288
osa-u.5
for
4339967
zma-u.5
for
100502315
zma-u.5
for
100383356
zma-u.5
for
100280226
tae-r.2
for
123088304
tae-r.2
for
123149570
tae-r.2
for
123148417
hvu-r.1
for
123413641
hvu-r.1
for
123413483
hvu-r.1
for
123412891
sbi-r.1
for
8081171
sbi-r.1
for
110431238
bdi-r.1
for
100842018


Ortholog ID: 2664
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr sly sot nta nta nta osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi
Symbol SLK3 SLK1 SLK2 LOC103861563 LOC103854973 LOC106418256 LOC125601363 LOC106426462 LOC121203502 LOC107947293 LOC107923489 LOC102621625 LOC547529 LOC100816886 LOC100789452 LOC100265879 LOC100254797 LOC7454480 LOC18103960 LOC120575899 SEU2 LOC102584857 LOC107811376 LOC107770245 LOC107797288 LOC4339967 LOC100502315 LOC100383356 LOC100280226 LOC123149570 LOC123164980 LOC123162671 LOC123413641 LOC123413483 LOC123412891 LOC8081171 LOC110431238 LOC100842018
Function* SEUSS-like 3 SEUSS-like 1 SEUSS-like 2 probable transcriptional regulator SLK1 probable transcriptional regulator SLK2 probable transcriptional regulator SLK1 probable transcriptional regulator SLK2 probable transcriptional regulator SLK1 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 transcriptional corepressor SEU2 probable transcriptional regulator SLK2 putative transcriptional regulator SLK2 putative transcriptional regulator SLK2 putative transcriptional regulator SLK2 probable transcriptional regulator SLK3 uncharacterized LOC100502315 putative transcriptional regulator SLK2 uncharacterized LOC100280226 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK3 probable transcriptional regulator SLK3 probable transcriptional regulator SLK3 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK2 probable transcriptional regulator SLK3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 3
ath03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly03250 Viral life cycle - HIV-1 2
sly03272 Virion - Hepatitis viruses 2
sly04144 Endocytosis 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04136 Autophagy - other 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
hvu03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828656 828657 836329 103861563 103854973 106418256 125601363 106426462 121203502 107947293 107923489 102621625 547529 100816886 100789452 100265879 100254797 7454480 18103960 120575899 101265803 102584857 107811376 107770245 107797288 4339967 100502315 100383356 100280226 123149570 123164980 123162671 123413641 123413483 123412891 8081171 110431238 100842018
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