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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   PAA1   proteasome alpha subunit A1 
 ath-u.5   PAA1   proteasome alpha subunit A1 
 ath-e.2   PAA1   proteasome alpha subunit A1 
 ath-u.5   PAA2   20S proteasome subunit PAA2 
 bra-r.6   103828507   proteasome subunit alpha type-6-B 
 bra-r.6   103860359   proteasome subunit alpha type-6-B 
 bna-r.1   106357739   proteasome subunit alpha type-6-B 
 bna-r.1   106439770   proteasome subunit alpha type-6-B 
 bna-r.1   106406638   proteasome subunit alpha type-6-B 
 ghi-r.1   107951081   proteasome subunit alpha type-6 
 ghi-r.1   107901053   proteasome subunit alpha type-6-like 
 ghi-r.1   107893369   proteasome subunit alpha type-6 
 cit-r.1   102619245   proteasome subunit alpha type-6 
 cit-r.1   102610983   proteasome subunit alpha type-6 
 gma-u.5   PAA1   proteasome subunit alpha type-6 
 gma-u.5   100803124   proteasome subunit alpha type-6 
 vvi-u.5   100261826   proteasome subunit alpha type-6 
 ppo-u.5   18100319   proteasome subunit alpha type-6 
 ppo-u.5   7472490   proteasome subunit alpha type-6 
 ppo-u.5   7484640   proteasome subunit alpha type-6 
 mtr-u.5   25502559   proteasome subunit alpha type-6 
 mtr-u.5   11440704   proteasome subunit alpha type-6 
 sly-u.5   101250370   proteasome subunit alpha type-6 
 sot-r.1   102582717   proteasome subunit alpha type-6 
 nta-r.1   107815705   proteasome subunit alpha type-6 
 nta-r.1   107824016   proteasome subunit alpha type-6-like 
 osa-u.5   4331828   proteasome subunit alpha type-6-like 
 osa-u.5   4343891   proteasome subunit alpha type-6 
 zma-u.5   542021   maize 20S proteasome alpha subunit 
 zma-u.5   100191154   uncharacterized LOC100191154 
 tae-r.2   123098662   proteasome subunit alpha type-6 
 tae-r.2   123084711   proteasome subunit alpha type-6 
 hvu-r.1   123449611   proteasome subunit alpha type-6 
 sbi-r.1   8082013   proteasome subunit alpha type-6 
 bdi-r.1   100835050   proteasome subunit alpha type-6 
 cre-r.1   CHLRE_17g705400v5   uncharacterized protein 

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Top 50 coexpressed genes to PAA1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAA1 (ath-r.7 coexpression data)

CoexMap"833524"


athPAA1 | Entrez gene ID : 833524      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 2 1 3 2 1 1 2 2 2 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0010043 [list] [network] response to zinc ion  (51 genes)  IEP  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (12 genes)  ISS  
GO:0005839 [list] [network] proteasome core complex  (23 genes)  TAS  
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_198409.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1,  cysk_nucl 1  (predict for NP_198409.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for NP_198409.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
PAA1
ath-u.5
for
PAA1
ath-e.2
for
PAA1
ath-u.5
for
PAA2
bra-r.6
for
103828507
bra-r.6
for
103860359
bna-r.1
for
106357739
bna-r.1
for
106439770
bna-r.1
for
106406638
ghi-r.1
for
107951081
ghi-r.1
for
107901053
ghi-r.1
for
107893369
cit-r.1
for
102619245
cit-r.1
for
102610983
gma-u.5
for
PAA1
gma-u.5
for
100803124
vvi-u.5
for
100261826
ppo-u.5
for
18100319
ppo-u.5
for
7472490
ppo-u.5
for
7484640
mtr-u.5
for
25502559
mtr-u.5
for
11440704
sly-u.5
for
101250370
sot-r.1
for
102582717
nta-r.1
for
107815705
nta-r.1
for
107824016
osa-u.5
for
4331828
osa-u.5
for
4343891
zma-u.5
for
542021
zma-u.5
for
100191154
tae-r.2
for
123098662
tae-r.2
for
123084711
hvu-r.1
for
123449611
sbi-r.1
for
8082013
bdi-r.1
for
100835050
cre-r.1
for
CHLRE_17g705400v5


Ortholog ID: 4672
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi ppo ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae hvu sbi bdi cre
Symbol PAA1 PAA2 LOC103828507 LOC103860359 LOC106357739 LOC106439770 LOC106389415 LOC107951081 LOC107901053 LOC107893369 LOC102619245 LOC102610983 PAA1 LOC100803124 LOC100261826 LOC18100319 LOC7472490 LOC7484640 LOC25502559 LOC11440704 LOC101250370 LOC102582717 LOC107815705 LOC107824016 LOC4331828 LOC4343891 LOC542021 LOC100191154 LOC123098662 LOC123449611 LOC8082013 LOC100835050 CHLRE_17g705400v5
Function* proteasome alpha subunit A1 20S proteasome subunit PAA2 proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B-like proteasome subunit alpha type-6 proteasome subunit alpha type-6-like proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6-like proteasome subunit alpha type-6-like proteasome subunit alpha type-6 maize 20S proteasome alpha subunit uncharacterized LOC100191154 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 16
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 19
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 16
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 13
ghi01230 Biosynthesis of amino acids 4
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 14
gma03040 Spliceosome 6
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 15
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 13
ppo04141 Protein processing in endoplasmic reticulum 4
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 11
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 14
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833524 815135 103828507 103860359 106357739 106439770 106389415 107951081 107901053 107893369 102619245 102610983 732640 100803124 100261826 18100319 7472490 7484640 25502559 11440704 101250370 102582717 107815705 107824016 4331828 4343891 542021 100191154 123098662 123449611 8082013 100835050 5717219
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