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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   PAA1   proteasome subunit alpha type-6 
 gma-r.7   PAA1   proteasome subunit alpha type-6 
 gma-m.5   PAA1   proteasome subunit alpha type-6 
 gma-u.5   100803124   proteasome subunit alpha type-6 
 mtr-u.5   25502559   proteasome subunit alpha type-6 
 mtr-u.5   11440704   proteasome subunit alpha type-6 
 ppo-u.5   18100319   proteasome subunit alpha type-6 
 ppo-u.5   7472490   proteasome subunit alpha type-6 
 ppo-u.5   7484640   proteasome subunit alpha type-6 
 ath-u.5   PAA2   20S proteasome subunit PAA2 
 ath-u.5   PAA1   proteasome alpha subunit A1 
 vvi-u.5   100261826   proteasome subunit alpha type-6 
 sly-u.5   101250370   proteasome subunit alpha type-6 
 osa-u.5   4331828   proteasome subunit alpha type-6-like 
 osa-u.5   4343891   proteasome subunit alpha type-6 
 zma-u.5   542021   maize 20S proteasome alpha subunit 
 zma-u.5   100191154   uncharacterized LOC100191154 

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Top 50 coexpressed genes to PAA1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAA1 (gma-u.5 coexpression data)

CoexMap"732640"


gmaPAA1 | Entrez gene ID : 732640    
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 3 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03050 [list] [network] Proteasome (106 genes)
GO BP
GO:0010498 [list] [network] proteasomal protein catabolic process  (315 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (481 genes)  IEA  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (22 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (39 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
Protein NP_001238251.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  cysk_nucl 1  (predict for NP_001238251.2)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for NP_001238251.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
PAA1

.
gma-r.7
for
PAA1

.
gma-m.5
for
PAA1

.
gma-u.5
for
100803124

.
mtr-u.5
for
25502559

.
mtr-u.5
for
11440704

.
ppo-u.5
for
18100319

.
ppo-u.5
for
7472490

.
ppo-u.5
for
7484640

.
ath-u.5
for
PAA2

.
ath-u.5
for
PAA1

.
vvi-u.5
for
100261826

.
sly-u.5
for
101250370

.
osa-u.5
for
4331828

.
osa-u.5
for
4343891

.
zma-u.5
for
542021

.
zma-u.5
for
100191154

.


Ortholog ID: 4672
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol PAA2 PAA1 LOC100803124 PAA1 LOC101250370 LOC4331828 LOC4343891 LOC542021 LOC100191154 LOC103828507 LOC103860359 LOC100261826 LOC18100319 LOC7472490 LOC11440704 LOC25502559 LOC123098662 LOC123449611 LOC107893369 LOC107901053 LOC106439770 LOC106389415 CHLRE_17g705400v5 LOC8082013 LOC102582717 LOC102610983 LOC102619245 LOC100835050 LOC107815705 LOC107824016
Function* 20S proteasome subunit PAA2 proteasome alpha subunit A1 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6-like proteasome subunit alpha type-6 maize 20S proteasome alpha subunit uncharacterized LOC100191154 proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6-like proteasome subunit alpha type-6-B proteasome subunit alpha type-6-B-like uncharacterized protein proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6 proteasome subunit alpha type-6-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 16
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 14
gma03040 Spliceosome 6
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 14
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 15
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 13
ghi01230 Biosynthesis of amino acids 4
ghi00030 Pentose phosphate pathway 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 19
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 16
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 11
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815135 833524 100803124 732640 101250370 4331828 4343891 542021 100191154 103828507 103860359 100261826 18100319 7472490 11440704 25502559 123098662 123449611 107893369 107901053 106439770 106389415 5717219 8082013 102582717 102610983 102619245 100835050 107815705 107824016
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