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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   CLPP4   CLP protease P4 
 ath-u.5   CLPP4   CLP protease P4 
 ath-m.9   CLPP4   CLP protease P4 
 ath-e.2   CLPP4   CLP protease P4 
 ath-m.4.bio   CLPP4   CLP protease P4 
 ath-m.4.hor   CLPP4   CLP protease P4 
 ath-m.4.lig   CLPP4   CLP protease P4 
 ath-m.4.str   CLPP4   CLP protease P4 
 ath-m.4.tis   CLPP4   CLP protease P4 
 bra-r.6   103827802   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bna-r.1   106375386   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bna-r.1   106386411   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ghi-r.1   107900718   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ghi-r.1   107930114   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 cit-r.1   102625246   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 gma-u.5   100814084   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 gma-u.5   100812280   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 vvi-u.5   100254000   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ppo-u.5   7491906   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 mtr-u.5   11409952   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sly-u.5   101267919   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sot-r.1   102605723   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 nta-r.1   107785710   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 nta-r.1   107765360   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 osa-u.5   4349523   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 zma-u.5   100272517   ATP-dependent Clp protease proteolytic subunit 
 tae-r.2   123126827   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 tae-r.2   123050969   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 tae-r.2   123181518   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 hvu-r.1   123437162   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sbi-r.1   8055115   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 bdi-r.1   100824309   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 cre-r.1   CHLRE_12g500950v5   uncharacterized protein 

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Top 50 coexpressed genes to CLPP4 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLPP4 (ath-r.7 coexpression data)

CoexMap"834575"


athCLPP4 | Entrez gene ID : 834575      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase  (43 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0009840 [list] [network] chloroplastic endopeptidase Clp complex  (8 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_568644.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_568644.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_568644.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
CLPP4
ath-u.5
for
CLPP4
ath-m.9
for
CLPP4
ath-e.2
for
CLPP4
ath-m.4.bio
for
CLPP4
ath-m.4.hor
for
CLPP4
ath-m.4.lig
for
CLPP4
ath-m.4.str
for
CLPP4
ath-m.4.tis
for
CLPP4
bra-r.6
for
103827802
bna-r.1
for
106375386
bna-r.1
for
106386411
ghi-r.1
for
107900718
ghi-r.1
for
107930114
cit-r.1
for
102625246
gma-u.5
for
100814084
gma-u.5
for
100812280
vvi-u.5
for
100254000
ppo-u.5
for
7491906
mtr-u.5
for
11409952
sly-u.5
for
101267919
sot-r.1
for
102605723
nta-r.1
for
107785710
nta-r.1
for
107765360
osa-u.5
for
4349523
zma-u.5
for
100272517
tae-r.2
for
123126827
tae-r.2
for
123050969
tae-r.2
for
123181518
hvu-r.1
for
123437162
sbi-r.1
for
8055115
bdi-r.1
for
100824309
cre-r.1
for
CHLRE_12g500950v5


Ortholog ID: 10361
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol CLPP4 LOC103827802 LOC106375386 LOC106386411 LOC107900718 LOC107930114 LOC102625246 LOC100814084 LOC100812280 LOC100254000 LOC7491906 LOC11409952 LOC101267919 LOC102605723 LOC107785710 LOC107765360 LOC4349523 LOC100272517 LOC123126827 LOC123050969 LOC123181518 LOC123437162 LOC8055115 LOC100824309 CHLRE_12g500950v5
Function* CLP protease P4 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00290 Valine, leucine and isoleucine biosynthesis 2
ppo00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00620 Pyruvate metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00020 Citrate cycle (TCA cycle) 3
tae00620 Pyruvate metabolism 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834575 103827802 106375386 106386411 107900718 107930114 102625246 100814084 100812280 100254000 7491906 11409952 101267919 102605723 107785710 107765360 4349523 100272517 123126827 123050969 123181518 123437162 8055115 100824309 5716386
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