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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT1G53780   26S proteasome regulatory complex ATPase 
 ath-u.5   AT1G53780   26S proteasome regulatory complex ATPase 
 ath-e.2   AT1G53780   26S proteasome regulatory complex ATPase 
 ath-u.5   RPT1A   regulatory particle triple-A 1A 
 bra-r.6   103871112   26S proteasome regulatory subunit 7 homolog A 
 bra-r.6   103867020   26S proteasome regulatory subunit 7-like 
 bra-r.6   103832650   26S proteasome regulatory subunit 7 homolog A 
 bna-r.1   106451013   26S proteasome regulatory subunit 7-like 
 bna-r.1   106391232   26S proteasome regulatory subunit 7 homolog A 
 bna-r.1   106345793   26S proteasome regulatory subunit 7 homolog A 
 ghi-r.1   121230846   26S proteasome regulatory subunit 7A 
 ghi-r.1   107960279   26S proteasome regulatory subunit 7A 
 ghi-r.1   107913828   26S proteasome regulatory subunit 7A 
 cit-r.1   102618498   26S proteasome regulatory subunit 7 
 cit-r.1   102616620   26S proteasome regulatory subunit 7 
 gma-u.5   100796358   26S protease regulatory subunit 7-like 
 gma-u.5   100808239   26S proteasome regulatory subunit 7 
 gma-u.5   100820271   26S proteasome regulatory subunit 7 
 vvi-u.5   100233125   26S proteasome regulatory subunit 7 
 ppo-u.5   18094660   26S proteasome regulatory subunit 7 homolog A 
 ppo-u.5   18109521   26S proteasome regulatory subunit 7 
 ppo-u.5   7492270   26S proteasome regulatory subunit 7 
 mtr-u.5   11421964   26S proteasome regulatory subunit 7 
 mtr-u.5   11443391   26S proteasome regulatory subunit 7 
 sly-u.5   101268371   26S proteasome regulatory subunit 7 homolog A 
 sly-u.5   101262927   26S proteasome regulatory subunit 7 homolog A 
 sot-r.1   102584898   26S protease regulatory subunit 7 homolog A 
 sot-r.1   102603313   26S protease regulatory subunit 7 homolog A-like 
 nta-r.1   107812149   26S proteasome regulatory subunit 7 homolog A 
 nta-r.1   107788960   26S proteasome regulatory subunit 7 homolog A 
 nta-r.1   107790702   26S proteasome regulatory subunit 7 homolog A-like 
 osa-u.5   4330943   26S proteasome regulatory subunit 7A-like 
 osa-u.5   4340376   26S proteasome regulatory subunit 7A-like 
 zma-u.5   100274064   uncharacterized LOC100274064 
 zma-u.5   100272769   uncharacterized LOC100272769 
 tae-r.2   123145806   26S proteasome regulatory subunit 7A 
 tae-r.2   123138733   26S proteasome regulatory subunit 7A 
 tae-r.2   123149811   26S proteasome regulatory subunit 7A 
 hvu-r.1   123407848   26S proteasome regulatory subunit 7A 
 hvu-r.1   123401440   26S proteasome regulatory subunit 7A-like 
 sbi-r.1   8061827   26S protease regulatory subunit 7A 
 sbi-r.1   8082699   26S protease regulatory subunit 7A 
 bdi-r.1   100841713   26S proteasome regulatory subunit 7A 
 cre-r.1   CHLRE_14g625400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G53780 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G53780 (ath-r.7 coexpression data)

CoexMap"841815"


athAT1G53780 | Entrez gene ID : 841815      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 1 3 2 2 2 3 2 2 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IEA  
Protein NP_001185216.1 [sequence] [blastp]
NP_001185217.1 [sequence] [blastp]
NP_001321046.1 [sequence] [blastp]
NP_175781.4 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  cysk 1  (predict for NP_001185216.1)
cyto 4,  cysk 1,  cysk_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001185217.1)
cyto 6,  chlo 1,  cysk 1  (predict for NP_001321046.1)
cyto 6,  chlo 1,  cysk 1  (predict for NP_175781.4)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for NP_001185216.1)
other 8  (predict for NP_001185217.1)
other 6,  scret 4  (predict for NP_001321046.1)
other 6,  scret 4  (predict for NP_175781.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT1G53780
ath-u.5
for
AT1G53780
ath-e.2
for
AT1G53780
ath-u.5
for
RPT1A
bra-r.6
for
103871112
bra-r.6
for
103867020
bra-r.6
for
103832650
bna-r.1
for
106451013
bna-r.1
for
106391232
bna-r.1
for
106345793
ghi-r.1
for
121230846
ghi-r.1
for
107960279
ghi-r.1
for
107913828
cit-r.1
for
102618498
cit-r.1
for
102616620
gma-u.5
for
100796358
gma-u.5
for
100808239
gma-u.5
for
100820271
vvi-u.5
for
100233125
ppo-u.5
for
18094660
ppo-u.5
for
18109521
ppo-u.5
for
7492270
mtr-u.5
for
11421964
mtr-u.5
for
11443391
sly-u.5
for
101268371
sly-u.5
for
101262927
sot-r.1
for
102584898
sot-r.1
for
102603313
nta-r.1
for
107812149
nta-r.1
for
107788960
nta-r.1
for
107790702
osa-u.5
for
4330943
osa-u.5
for
4340376
zma-u.5
for
100274064
zma-u.5
for
100272769
tae-r.2
for
123145806
tae-r.2
for
123138733
tae-r.2
for
123149811
hvu-r.1
for
123407848
hvu-r.1
for
123401440
sbi-r.1
for
8061827
sbi-r.1
for
8082699
bdi-r.1
for
100841713
cre-r.1
for
CHLRE_14g625400v5


Ortholog ID: 2772
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol AT1G53780 RPT1A LOC103871112 LOC103832650 LOC103848512 LOC106451013 LOC106345793 LOC106377314 LOC107913828 LOC107897470 LOC107958339 LOC102618498 LOC102616620 LOC100808239 LOC100820271 LOC100779787 LOC100233125 LOC18094660 LOC18109521 LOC7492270 LOC11421964 LOC11443391 LOC101268371 LOC101262927 LOC102584898 LOC102603313 LOC107812149 LOC107790702 LOC107807071 LOC4330943 LOC4340376 LOC100274064 LOC100272769 LOC123145806 LOC123157545 LOC123128672 LOC123407848 LOC123401440 LOC8061827 LOC8082699 LOC100841713 CHLRE_14g625400v5
Function* 26S proteasome regulatory complex ATPase regulatory particle triple-A 1A 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7-like 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 homolog A 26S protease regulatory subunit 7 homolog A 26S protease regulatory subunit 7 homolog A-like 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7 homolog A-like 26S proteasome regulatory subunit 7 homolog A 26S proteasome regulatory subunit 7A-like 26S proteasome regulatory subunit 7A-like uncharacterized LOC100274064 uncharacterized LOC100272769 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A 26S proteasome regulatory subunit 7A-like 26S protease regulatory subunit 7A 26S protease regulatory subunit 7A 26S proteasome regulatory subunit 7A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00190 Oxidative phosphorylation 2
ghi04145 Phagosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00190 Oxidative phosphorylation 2
ghi04145 Phagosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00190 Oxidative phosphorylation 2
ghi04145 Phagosome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit04141 Protein processing in endoplasmic reticulum 2
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03040 Spliceosome 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 9
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 12
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 16
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 14
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 13
vvi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 6
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 14
ppo04145 Phagosome 3
ppo00190 Oxidative phosphorylation 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 13
sly00010 Glycolysis / Gluconeogenesis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 11
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 7
sot04144 Endocytosis 3
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 10
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
nta04712 Circadian rhythm - plant 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 17
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 17
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 13
tae03420 Nucleotide excision repair 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 18
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 9
sbi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 7
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 20
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841815 841812 103871112 103832650 103848512 106451013 106345793 106377314 107913828 107897470 107958339 102618498 102616620 100808239 100820271 100779787 100233125 18094660 18109521 7492270 11421964 11443391 101268371 101262927 102584898 102603313 107812149 107790702 107807071 4330943 4340376 100274064 100272769 123145806 123157545 123128672 123407848 123401440 8061827 8082699 100841713 5718297
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