ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103832650	26S proteasome regulatory subunit 7 homolog A
ath-u.5	RPT1A	regulatory particle triple-A 1A
ath-u.5	AT1G53780	26S proteasome regulatory complex ATPase
gma-u.5	100820271	26S proteasome regulatory subunit 7
gma-u.5	100808239	26S proteasome regulatory subunit 7
gma-u.5	100796358	26S protease regulatory subunit 7-like
vvi-u.5	100233125	26S proteasome regulatory subunit 7
ppo-u.5	18109521	26S proteasome regulatory subunit 7
ppo-u.5	18094660	26S proteasome regulatory subunit 7 homolog A
ppo-u.5	7492270	26S proteasome regulatory subunit 7
mtr-u.5	11443391	26S proteasome regulatory subunit 7
mtr-u.5	11421964	26S proteasome regulatory subunit 7
sly-u.5	101268371	26S proteasome regulatory subunit 7 homolog A
sly-u.5	101262927	26S proteasome regulatory subunit 7 homolog A
osa-u.5	4340376	26S proteasome regulatory subunit 7A-like
osa-u.5	4330943	26S proteasome regulatory subunit 7A-like
zma-u.5	100272769	uncharacterized LOC100272769
zma-u.5	100274064	uncharacterized LOC100274064

Top 50 coexpressed genes to 103832650 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103832650 (bra-r.6 coexpression data)

CoexMap"103832650"

[Cytoscape]

Annotation

functional annotation

KEGG

brp03050 [list] [network] Proteasome (101 genes)

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(232 genes)

IEA

GO CC

GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex

(30 genes)

IEA

GO MF

GO:0036402 [list] [network] proteasome-activating activity	(21 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(641 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2916 genes)	IEA

Protein

XP_009106959.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1, mito 1, cysk 1, chlo_mito 1

(predict for XP_009106959.1)

Subcellular
localization
TargetP

other 9

(predict for XP_009106959.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103832650	ath-u.5 for RPT1A	ath-u.5 for AT1G53780	gma-u.5 for 100820271	gma-u.5 for 100808239	gma-u.5 for 100796358	vvi-u.5 for 100233125	ppo-u.5 for 18109521	ppo-u.5 for 18094660	ppo-u.5 for 7492270	mtr-u.5 for 11443391	mtr-u.5 for 11421964	sly-u.5 for 101268371	sly-u.5 for 101262927	osa-u.5 for 4340376	osa-u.5 for 4330943	zma-u.5 for 100272769	zma-u.5 for 100274064

Ortholog

Ortholog ID: 2772

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RPT1A

Function^*

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7-like

regulatory particle triple-A 1A

26S proteasome regulatory complex ATPase

26S proteasome regulatory subunit 7A

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7

26S proteasome regulatory subunit 7 homolog A

26S protease regulatory subunit 7 homolog A-like

26S protease regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7 homolog A

26S proteasome regulatory subunit 7A-like

uncharacterized LOC100272769

uncharacterized LOC100274064

26S proteasome regulatory subunit 7A

26S proteasome regulatory subunit 7A-like

26S proteasome regulatory subunit 7A

26S protease regulatory subunit 7A

26S proteasome regulatory subunit 7A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	12
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi00190	Oxidative phosphorylation	2
ghi04145	Phagosome	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	9
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	5
cit04141	Protein processing in endoplasmic reticulum	2
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03040	Spliceosome	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	14
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	12
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	13
vvi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	6
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	11
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	13
sly00010	Glycolysis / Gluconeogenesis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	7
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	11
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	11
nta03008	Ribosome biogenesis in eukaryotes	2
nta03083	Polycomb repressive complex	2
nta04712	Circadian rhythm - plant	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	17
zma03420	Nucleotide excision repair	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	17
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	18
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	13
tae03420	Nucleotide excision repair	2
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	7
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	9
sbi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	20

Expression

Expression pattern

Entrez Gene ID^*

103848512

103832650

106345793

106451013

841812

841815

107958339

107913828

102616620

102618498

100779787

100808239

100233125

18094660

18109521

11421964

11443391

101262927

101268371

102603313

102584898

107812149

107807071

4340376

4330943

100272769

100274064

123157545

123145806

123401440

123407848

8082699

8061827

100841713

5718297

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Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	3	1	3	2	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103832650 (bra-r.6 coexpression data)

Top 50 enrichment test to 103832650 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**