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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   ts1   tasselseed1 
 zma-r.6   ts1   tasselseed1 
 zma-m.5   ts1   tasselseed1 
 zma-u.5   lox9   linoleate 13S-lipoxygenase9 
 zma-u.5   lox7   linoleate 13S-lipoxygenase7 
 sbi-r.1   8082015   probable lipoxygenase 6 
 sbi-r.1   8065835   putative lipoxygenase 5 
 osa-u.5   4331824   probable lipoxygenase 6 
 osa-u.5   9267158   putative lipoxygenase 5 
 tae-r.2   123045591   putative lipoxygenase 5 
 tae-r.2   123084716   probable lipoxygenase 6 
 tae-r.2   123098654   probable lipoxygenase 6 
 hvu-r.1   123426843   putative lipoxygenase 5 
 hvu-r.1   123449608   probable lipoxygenase 6 
 bdi-r.1   100829163   probable lipoxygenase 6 
 bdi-r.1   100831197   putative lipoxygenase 5 
 ath-u.5   LOX3   lipoxygenase 3 
 ath-u.5   LOX6   PLAT/LH2 domain-containing lipoxygenase family protein 
 ath-u.5   LOX4   PLAT/LH2 domain-containing lipoxygenase family protein 
 gma-u.5   100811820   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 gma-u.5   100817322   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 gma-u.5   100814410   lipoxygenase 6, chloroplastic 
 sly-u.5   101263024   lipoxygenase 6, chloroplastic 
 sly-u.5   loxD   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 bra-r.6   103852787   lipoxygenase 4, chloroplastic 
 bra-r.6   103852410   lipoxygenase 6, chloroplastic 
 bra-r.6   103842751   lipoxygenase 3, chloroplastic 
 vvi-u.5   100244202   lipoxygenase 6, chloroplastic 
 vvi-u.5   LOXO   lipoxygenase 
 ppo-u.5   7494782   lipoxygenase 6, chloroplastic 
 ppo-u.5   18094717   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 ppo-u.5   7477038   lipoxygenase 6, chloroplastic 
 mtr-u.5   25501722   lipoxygenase 6, chloroplastic 
 mtr-u.5   11430427   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 ghi-r.1   107904213   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 ghi-r.1   107909824   lipoxygenase 6, chloroplastic 
 ghi-r.1   107915240   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 bna-r.1   111207131   lipoxygenase 6, chloroplastic 
 bna-r.1   125585696   lipoxygenase 6, chloroplastic-like 
 bna-r.1   125578565   lipoxygenase 3, chloroplastic-like 
 sot-r.1   102583480   lipoxygenase 6, chloroplastic-like 
 sot-r.1   102588373   lipoxygenase 6, chloroplastic-like 
 sot-r.1   102597498   linoleate 13S-lipoxygenase 3-1, chloroplastic-like 
 cit-r.1   102620930   lipoxygenase 6, chloroplastic 
 cit-r.1   102622489   linoleate 13S-lipoxygenase 3-1, chloroplastic-like 
 nta-r.1   107814671   linoleate 13S-lipoxygenase 3-1, chloroplastic 
 nta-r.1   107829039   lipoxygenase 6, chloroplastic 
 nta-r.1   107820064   lipoxygenase 6, chloroplastic 

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Top 50 coexpressed genes to ts1 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ts1 (zma-u.5 coexpression data)

CoexMap"100037808"


zmats1 | Entrez gene ID : 100037808    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 5 2 2 3 2 2 3 3 2 3 2 3 2 3 3 3 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00591 [list] [network] Linoleic acid metabolism (17 genes)
zma00592 [list] [network] alpha-Linolenic acid metabolism (52 genes)
GO BP
GO:0034440 [list] [network] lipid oxidation  (53 genes)  IEA  
GO CC
GO MF
GO:0016702 [list] [network] oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  (51 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2153 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein NP_001339442.1 [sequence] [blastp]
XP_008666983.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001339442.1)
chlo 9  (predict for XP_008666983.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001339442.1)
chlo 8  (predict for XP_008666983.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
ts1
zma-r.6
for
ts1
zma-m.5
for
ts1
zma-u.5
for
lox9
zma-u.5
for
lox7
sbi-r.1
for
8082015
sbi-r.1
for
8065835
osa-u.5
for
4331824
osa-u.5
for
9267158
tae-r.2
for
123045591
tae-r.2
for
123084716
tae-r.2
for
123098654
hvu-r.1
for
123426843
hvu-r.1
for
123449608
bdi-r.1
for
100829163
bdi-r.1
for
100831197
ath-u.5
for
LOX3
ath-u.5
for
LOX6
ath-u.5
for
LOX4
gma-u.5
for
100811820
gma-u.5
for
100817322
gma-u.5
for
100814410
sly-u.5
for
101263024
sly-u.5
for
loxD
bra-r.6
for
103852787
bra-r.6
for
103852410
bra-r.6
for
103842751
vvi-u.5
for
100244202
vvi-u.5
for
LOXO
ppo-u.5
for
7494782
ppo-u.5
for
18094717
ppo-u.5
for
7477038
mtr-u.5
for
25501722
mtr-u.5
for
11430427
ghi-r.1
for
107904213
ghi-r.1
for
107909824
ghi-r.1
for
107915240
bna-r.1
for
111207131
bna-r.1
for
125585696
bna-r.1
for
125578565
sot-r.1
for
102583480
sot-r.1
for
102588373
sot-r.1
for
102597498
cit-r.1
for
102620930
cit-r.1
for
102622489
nta-r.1
for
107814671
nta-r.1
for
107829039
nta-r.1
for
107820064


Ortholog ID: 1772
Species zma zma zma sbi sbi osa osa tae tae tae hvu hvu bdi bdi ath ath ath gma gma gma sly sly bra bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta nta
Symbol ts1 lox9 lox7 LOC8082015 LOC8065835 LOC4331824 LOC9267158 LOC123098654 LOC123189338 LOC123053431 LOC123426843 LOC123449608 LOC100829163 LOC100831197 LOX3 LOX6 LOX4 LOC100811820 LOC100793614 LOC100800065 LOC101263024 loxD LOC103852410 LOC103842751 LOC103835956 LOC100244202 LOXO LOC7494782 LOC18094717 LOC7477038 LOC25501722 LOC11430427 LOC121230896 LOC107886453 LOC107892610 LOC125585696 LOC125578565 LOC106358574 LOC102583480 LOC102588373 LOC102597498 LOC102620930 LOC102622489 LOC107814671 LOC107820064 LOC107829038
Function* tasselseed1 linoleate 13S-lipoxygenase9 linoleate 13S-lipoxygenase7 probable lipoxygenase 6 putative lipoxygenase 5 probable lipoxygenase 6 putative lipoxygenase 5 probable lipoxygenase 6 putative lipoxygenase 5 putative lipoxygenase 5 putative lipoxygenase 5 probable lipoxygenase 6 probable lipoxygenase 6 putative lipoxygenase 5 lipoxygenase 3 PLAT/LH2 domain-containing lipoxygenase family protein PLAT/LH2 domain-containing lipoxygenase family protein linoleate 13S-lipoxygenase 3-1, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic lipoxygenase 6, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic lipoxygenase 6, chloroplastic lipoxygenase 3, chloroplastic lipoxygenase 3, chloroplastic lipoxygenase 6, chloroplastic lipoxygenase lipoxygenase 6, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic lipoxygenase 6, chloroplastic lipoxygenase 6, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic lipoxygenase 6, chloroplastic lipoxygenase 3, chloroplastic lipoxygenase 6, chloroplastic-like lipoxygenase 3, chloroplastic-like lipoxygenase 3, chloroplastic lipoxygenase 6, chloroplastic-like lipoxygenase 6, chloroplastic-like linoleate 13S-lipoxygenase 3-1, chloroplastic-like lipoxygenase 6, chloroplastic linoleate 13S-lipoxygenase 3-1, chloroplastic-like linoleate 13S-lipoxygenase 3-1, chloroplastic lipoxygenase 6, chloroplastic lipoxygenase 6, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00592 alpha-Linolenic acid metabolism 3
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 3
zma04070 Phosphatidylinositol signaling system 3
zma00591 Linoleic acid metabolism 2
zma00562 Inositol phosphate metabolism 2
zma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00592 alpha-Linolenic acid metabolism 5
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00592 alpha-Linolenic acid metabolism 4
osa00280 Valine, leucine and isoleucine degradation 2
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
tae04626 Plant-pathogen interaction 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04626 Plant-pathogen interaction 3
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 4
tae04626 Plant-pathogen interaction 4
tae00591 Linoleic acid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 3
hvu00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 6
hvu00941 Flavonoid biosynthesis 3
hvu00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
hvu00360 Phenylalanine metabolism 3
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 6
ath04075 Plant hormone signal transduction 5
ath00904 Diterpenoid biosynthesis 2
ath00591 Linoleic acid metabolism 2
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00460 Cyanoamino acid metabolism 2
ath00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 5
ath04075 Plant hormone signal transduction 5
ath00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00591 Linoleic acid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
gma00591 Linoleic acid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00591 Linoleic acid metabolism 2
gma00592 alpha-Linolenic acid metabolism 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 4
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 4
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00592 alpha-Linolenic acid metabolism 5
bra00591 Linoleic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00592 alpha-Linolenic acid metabolism 6
bra04075 Plant hormone signal transduction 5
bra00591 Linoleic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 4
vvi04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00592 alpha-Linolenic acid metabolism 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00591 Linoleic acid metabolism 3
ppo00592 alpha-Linolenic acid metabolism 2
ppo00900 Terpenoid backbone biosynthesis 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 3
mtr00500 Starch and sucrose metabolism 3
mtr01200 Carbon metabolism 3
mtr00195 Photosynthesis 2
mtr00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 5
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
mtr00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04082 Neuroactive ligand signaling 4
ghi00591 Linoleic acid metabolism 2
ghi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00591 Linoleic acid metabolism 3
ghi00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00591 Linoleic acid metabolism 4
bna00592 alpha-Linolenic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00591 Linoleic acid metabolism 6
bna00592 alpha-Linolenic acid metabolism 6
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00591 Linoleic acid metabolism 6
bna00592 alpha-Linolenic acid metabolism 6
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 4
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00592 alpha-Linolenic acid metabolism 5
sot00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00592 alpha-Linolenic acid metabolism 3
sot00270 Cysteine and methionine metabolism 2
sot00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00591 Linoleic acid metabolism 2
nta00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00592 alpha-Linolenic acid metabolism 5
nta04075 Plant hormone signal transduction 4
nta00591 Linoleic acid metabolism 3
nta00071 Fatty acid degradation 2
nta00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
nta00591 Linoleic acid metabolism 3
nta00592 alpha-Linolenic acid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100037808 100037806 100037807 8082015 8065835 4331824 9267158 123098654 123189338 123053431 123426843 123449608 100829163 100831197 838314 843077 843584 100811820 100793614 100800065 101263024 544009 103852410 103842751 103835956 100244202 100241150 7494782 18094717 7477038 25501722 11430427 121230896 107886453 107892610 125585696 125578565 106358574 102583480 102588373 102597498 102620930 102622489 107814671 107820064 107829038
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