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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   R-S   seed color component at R1 
 zma-r.6   R-S   seed color component at R1 
 zma-u.5   103646088   uncharacterized LOC103646088 
 osa-u.5   4323849   anthocyanin regulatory R-S protein 
 ath-u.5   GL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   EGL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100808167   transcription factor EGL1 
 gma-u.5   100798122   transcription factor EGL1 
 gma-u.5   100795524   transcription factor EGL1 
 sly-u.5   JAF13   bHLH-type transcription factor JAF13 
 vvi-u.5   MYCA1   myc anthocyanin regulatory protein 
 vvi-u.5   100258234   transcription factor EGL1 
 ppo-u.5   7461769   transcription factor EGL1 
 ppo-u.5   7465866   transcription factor EGL1 
 ppo-u.5   7479311   transcription factor GLABRA 3 
 mtr-u.5   25502049   transcription factor EGL1 

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Top 50 coexpressed genes to R-S (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to R-S (zma-u.5 coexpression data)

CoexMap"100126972"


zmaR-S | Entrez gene ID : 100126972      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 3 1 2 3 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
Protein NP_001105339.2 [sequence] [blastp]
NP_001106073.2 [sequence] [blastp]
XP_008661283.1 [sequence] [blastp]
XP_008661285.1 [sequence] [blastp]
XP_008661286.1 [sequence] [blastp]
XP_008661287.1 [sequence] [blastp]
XP_008661288.1 [sequence] [blastp]
XP_035818751.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for NP_001105339.2)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for NP_001106073.2)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661283.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661285.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661286.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661287.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_008661288.1)
nucl 6,  nucl_plas 4,  chlo 1,  cysk 1  (predict for XP_035818751.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_001105339.2)
mito 6  (predict for NP_001106073.2)
mito 6  (predict for XP_008661283.1)
mito 6  (predict for XP_008661285.1)
mito 6  (predict for XP_008661286.1)
mito 6  (predict for XP_008661287.1)
mito 6  (predict for XP_008661288.1)
mito 6  (predict for XP_035818751.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
R-S

.
zma-r.6
for
R-S

.
zma-u.5
for
103646088

.
osa-u.5
for
4323849

.
ath-u.5
for
GL3

.
ath-u.5
for
EGL3

.
gma-u.5
for
100808167

.
gma-u.5
for
100798122

.
gma-u.5
for
100795524

.
sly-u.5
for
JAF13

.
vvi-u.5
for
MYCA1

.
vvi-u.5
for
100258234

.
ppo-u.5
for
7461769

.
ppo-u.5
for
7465866

.
ppo-u.5
for
7479311

.
mtr-u.5
for
25502049

.


Ortholog ID: 2357
Species ath ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr ghi ghi bna bna sbi sot cit cit nta nta
Symbol GL3 EGL3 LOC100783746 LOC100795524 JAF13 LOC4323849 LOC103646088 R-S LOC103864070 EGL3 MYCA1 LOC100258234 LOC7479311 LOC7461769 LOC25502049 LOC107922777 LOC107911518 LOC106424835 LOC106366513 LOC8056590 JAF13 LOC127901489 LOC102624378 LOC107826976 LOC107764381
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor EGL1 transcription factor EGL1 bHLH-type transcription factor JAF13 anthocyanin regulatory R-S protein uncharacterized LOC103646088 seed color component at R1 transcription factor GLABRA 3 transcription factor EGL1 myc anthocyanin regulatory protein transcription factor EGL1 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 anthocyanin regulatory R-S protein transcription factor GLABRA 3-like transcription factor EGL1-like transcription factor EGL1 transcription factor EGL1-like transcription factor EGL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 5
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 7
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00330 Arginine and proline metabolism 2
ppo00360 Phenylalanine metabolism 2
ppo00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 3
mtr04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834133 842669 100783746 100795524 101256795 4323849 103646088 100126972 103864070 103838261 100233025 100258234 7479311 7461769 25502049 107922777 107911518 106424835 106366513 8056590 102597504 127901489 102624378 107826976 107764381
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