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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   JAF13   transcription factor GLABRA 3-like 
 sly-u.5   JAF13   bHLH-type transcription factor JAF13 
 nta-r.1   107826976   transcription factor EGL1-like 
 nta-r.1   107764381   transcription factor EGL1-like 
 ath-u.5   GL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   EGL3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100808167   transcription factor EGL1 
 gma-u.5   100798122   transcription factor EGL1 
 gma-u.5   100795524   transcription factor EGL1 
 bra-r.6   103864070   transcription factor GLABRA 3 
 bra-r.6   EGL3   transcription factor EGL1 
 bra-r.6   103838089   transcription factor EGL1 
 vvi-u.5   100258234   transcription factor EGL1 
 vvi-u.5   MYCA1   myc anthocyanin regulatory protein 
 ppo-u.5   7461769   transcription factor EGL1 
 ppo-u.5   7465866   transcription factor EGL1 
 ppo-u.5   7494081   transcription factor EGL1 
 mtr-u.5   25502049   transcription factor EGL1 
 ghi-r.1   107922777   transcription factor EGL1 
 ghi-r.1   107904486   transcription factor EGL1-like 
 ghi-r.1   107911518   transcription factor GLABRA 3 
 bna-r.1   106390918   transcription factor EGL1-like 
 bna-r.1   106392188   transcription factor EGL1 
 bna-r.1   106424835   transcription factor EGL1 
 cit-r.1   102606766   transcription factor GLABRA 3-like 
 cit-r.1   102624378   transcription factor EGL1 
 cit-r.1   127901489   transcription factor EGL1-like 
 osa-u.5   4323849   anthocyanin regulatory R-S protein 
 zma-u.5   R-S   seed color component at R1 
 zma-u.5   103646088   uncharacterized LOC103646088 
 tae-r.2   123098945   anthocyanin regulatory R-S protein-like 
 sbi-r.1   8056590   anthocyanin regulatory R-S protein 

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Top 50 coexpressed genes to JAF13 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to JAF13 (sot-r.1 coexpression data)

CoexMap"102597504"


sotJAF13 | Entrez gene ID : 102597504    
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae sbi cre bdi hvu
Paralog 1 1 2 2 3 3 2 3 1 3 3 3 1 2 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (559 genes)  IEA  
Protein NP_001275132.1 [sequence] [blastp]
XP_006343977.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001275132.1)
nucl 10  (predict for XP_006343977.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for NP_001275132.1)
other 7,  mito 4  (predict for XP_006343977.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
JAF13
sly-u.5
for
JAF13
nta-r.1
for
107826976
nta-r.1
for
107764381
ath-u.5
for
GL3
ath-u.5
for
EGL3
gma-u.5
for
100808167
gma-u.5
for
100798122
gma-u.5
for
100795524
bra-r.6
for
103864070
bra-r.6
for
EGL3
bra-r.6
for
103838089
vvi-u.5
for
100258234
vvi-u.5
for
MYCA1
ppo-u.5
for
7461769
ppo-u.5
for
7465866
ppo-u.5
for
7494081
mtr-u.5
for
25502049
ghi-r.1
for
107922777
ghi-r.1
for
107904486
ghi-r.1
for
107911518
bna-r.1
for
106390918
bna-r.1
for
106392188
bna-r.1
for
106424835
cit-r.1
for
102606766
cit-r.1
for
102624378
cit-r.1
for
127901489
osa-u.5
for
4323849
zma-u.5
for
R-S
zma-u.5
for
103646088
tae-r.2
for
123098945
sbi-r.1
for
8056590


Ortholog ID: 2357
Species sot sly nta nta ath ath gma gma gma bra bra bra vvi vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna cit cit cit osa zma zma sbi
Symbol JAF13 JAF13 LOC107826976 LOC107764381 GL3 EGL3 LOC100798122 LOC100795524 LOC100783746 LOC103864070 EGL3 LOC103838089 LOC100258234 MYCA1 LOC7461769 LOC7465866 LOC7479311 LOC25502049 LOC107922777 LOC107911518 LOC107922841 LOC106392188 LOC106424835 LOC106366513 LOC102606766 LOC102624378 LOC127901489 LOC4323849 R-S LOC103646088 LOC8056590
Function* transcription factor GLABRA 3-like bHLH-type transcription factor JAF13 transcription factor EGL1-like transcription factor EGL1-like basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 myc anthocyanin regulatory protein transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3 transcription factor GLABRA 3 transcription factor EGL1 transcription factor EGL1 transcription factor EGL1 transcription factor GLABRA 3-like transcription factor EGL1 transcription factor EGL1-like anthocyanin regulatory R-S protein seed color component at R1 uncharacterized LOC103646088 anthocyanin regulatory R-S protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 5
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00330 Arginine and proline metabolism 2
ppo00360 Phenylalanine metabolism 2
ppo00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 3
mtr04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00941 Flavonoid biosynthesis 7
zma04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102597504 101256795 107826976 107764381 834133 842669 100798122 100795524 100783746 103864070 103838261 103838089 100258234 100233025 7461769 7465866 7479311 25502049 107922777 107911518 107922841 106392188 106424835 106366513 102606766 102624378 127901489 4323849 100126972 103646088 8056590
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