ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100192821	uncharacterized LOC100192821
zma-r.6	100192821	uncharacterized LOC100192821
zma-m.5	100192821	uncharacterized LOC100192821
zma-u.5	542693	Serine/arginine-rich splicing factor RS31A
zma-u.5	100193841	uncharacterized LOC100193841
zma-u.5	542174	arginine/serine-rich splicing factor 1
sbi-r.1	8055045	serine/arginine-rich splicing factor RS41
sbi-r.1	8059482	serine/arginine-rich splicing factor RS31
sbi-r.1	8065977	serine/arginine-rich splicing factor RS31
osa-u.5	4328133	serine/arginine-rich splicing factor RS41
osa-u.5	4334964	serine/arginine-rich splicing factor RS31
tae-r.2	123050970	serine/arginine-rich splicing factor RS31
tae-r.2	123135841	serine/arginine-rich splicing factor RS41
tae-r.2	123143365	serine/arginine-rich splicing factor RS41
hvu-r.1	123431480	serine/arginine-rich splicing factor RS31-like
hvu-r.1	123450013	serine/arginine-rich splicing factor RS31-like
hvu-r.1	123401142	serine/arginine-rich splicing factor RS41-like
bdi-r.1	100841146	serine/arginine-rich splicing factor RS41
bdi-r.1	100825680	serine/arginine-rich splicing factor RS31
bdi-r.1	100825761	serine/arginine-rich splicing factor RS31
ath-u.5	RS41	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	RS31a	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	RS31	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100815452	serine/arginine-rich splicing factor RS41
gma-u.5	100796509	arginine/serine-rich-splicing factor RSP40-like
gma-u.5	100801043	serine/arginine-rich splicing factor RS31
sly-u.5	101266564	serine/arginine-rich splicing factor RS31
sly-u.5	101246991	serine/arginine-rich splicing factor RS31
sly-u.5	101258786	serine/arginine-rich splicing factor RS31
bra-r.6	103834867	serine/arginine-rich splicing factor RS40
bra-r.6	103863268	serine/arginine-rich splicing factor RS40
bra-r.6	103866451	serine/arginine-rich splicing factor RS31
vvi-u.5	100262670	serine/arginine-rich splicing factor RS41
vvi-u.5	100255597	serine/arginine-rich splicing factor RS41
vvi-u.5	100255266	serine/arginine-rich splicing factor RS31
ppo-u.5	7454468	serine/arginine-rich splicing factor RS40
ppo-u.5	7464900	serine/arginine-rich splicing factor RS41
ppo-u.5	7482121	serine/arginine-rich splicing factor RS40
mtr-u.5	11445062	serine/arginine-rich splicing factor RS31
mtr-u.5	25483279	uncharacterized LOC25483279
mtr-u.5	25500953	serine/arginine-rich splicing factor RS41
ghi-r.1	121224407	serine/arginine-rich splicing factor RS40
ghi-r.1	107948157	serine/arginine-rich splicing factor RS31
ghi-r.1	107945907	serine/arginine-rich splicing factor RS31
bna-r.1	111212091	serine/arginine-rich splicing factor RS41-like
bna-r.1	106347095	serine/arginine-rich splicing factor RS40
bna-r.1	106442982	serine/arginine-rich splicing factor RS40
sot-r.1	102593185	serine/arginine-rich splicing factor RS41-like
sot-r.1	102598910	serine/arginine-rich splicing factor RS31-like
sot-r.1	102587621	serine/arginine-rich splicing factor RS31
cit-r.1	127898598	serine/arginine-rich splicing factor RS31-like
cit-r.1	102619264	serine/arginine-rich splicing factor RS40
cit-r.1	102609625	serine/arginine-rich splicing factor RS31
nta-r.1	107802667	serine/arginine-rich splicing factor RS41
nta-r.1	107761600	serine/arginine-rich splicing factor RS41
nta-r.1	107764669	serine/arginine-rich splicing factor RS31-like
cre-r.1	CHLRE_16g674250v5	uncharacterized protein

Top 50 coexpressed genes to 100192821 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100192821 (zma-u.5 coexpression data)

CoexMap"100192821"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03040 [list] [network] Spliceosome (506 genes)

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1549 genes)

IEA

Protein

NP_001131484.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, chlo 1

(predict for NP_001131484.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for NP_001131484.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100192821	zma-r.6 for 100192821	zma-m.5 for 100192821	zma-u.5 for 542693	zma-u.5 for 100193841	zma-u.5 for 542174	sbi-r.1 for 8055045	sbi-r.1 for 8059482	sbi-r.1 for 8065977	osa-u.5 for 4328133	osa-u.5 for 4334964	tae-r.2 for 123050970	tae-r.2 for 123135841	tae-r.2 for 123143365	hvu-r.1 for 123431480	hvu-r.1 for 123450013	hvu-r.1 for 123401142	bdi-r.1 for 100841146	bdi-r.1 for 100825680	bdi-r.1 for 100825761	ath-u.5 for RS41	ath-u.5 for RS31a	ath-u.5 for RS31	gma-u.5 for 100815452	gma-u.5 for 100796509	gma-u.5 for 100801043	sly-u.5 for 101266564	sly-u.5 for 101246991	sly-u.5 for 101258786	bra-r.6 for 103834867	bra-r.6 for 103863268	bra-r.6 for 103866451	vvi-u.5 for 100262670	vvi-u.5 for 100255597	vvi-u.5 for 100255266	ppo-u.5 for 7454468	ppo-u.5 for 7464900	ppo-u.5 for 7482121	mtr-u.5 for 11445062	mtr-u.5 for 25483279	mtr-u.5 for 25500953	ghi-r.1 for 121224407	ghi-r.1 for 107948157	ghi-r.1 for 107945907	bna-r.1 for 111212091	bna-r.1 for 106347095	bna-r.1 for 106442982	sot-r.1 for 102593185	sot-r.1 for 102598910	sot-r.1 for 102587621	cit-r.1 for 127898598	cit-r.1 for 102619264	cit-r.1 for 102609625	nta-r.1 for 107802667	nta-r.1 for 107761600	nta-r.1 for 107764669	cre-r.1 for CHLRE_16g674250v5

Ortholog

Ortholog ID: 1146

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RS41

RS31a

RS31

Function^*

uncharacterized LOC100192821

uncharacterized LOC100193841

uncharacterized LOC100281308

serine/arginine-rich splicing factor RS41