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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542174   arginine/serine-rich splicing factor 1 
 zma-r.6   542174   arginine/serine-rich splicing factor 1 
 zma-m.5   542174   arginine/serine-rich splicing factor 1 
 zma-u.5   100193841   uncharacterized LOC100193841 
 zma-u.5   542693   Serine/arginine-rich splicing factor RS31A 
 zma-u.5   100192821   uncharacterized LOC100192821 
 osa-u.5   4334964   serine/arginine-rich splicing factor RS31 
 osa-u.5   4328133   serine/arginine-rich splicing factor RS41 
 ath-u.5   RS31a   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RS31   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RS40   arginine/serine-rich splicing factor 35 
 gma-u.5   100781534   serine/arginine-rich splicing factor RS40 
 gma-u.5   100815452   serine/arginine-rich splicing factor RS41 
 gma-u.5   100801043   serine/arginine-rich splicing factor RS31 
 sly-u.5   101246991   serine/arginine-rich splicing factor RS31 
 sly-u.5   101263057   serine/arginine-rich splicing factor RS41 
 sly-u.5   101264097   serine/arginine-rich splicing factor RS31 
 vvi-u.5   100255597   serine/arginine-rich splicing factor RS41 
 vvi-u.5   100255266   serine/arginine-rich splicing factor RS31 
 vvi-u.5   100262670   serine/arginine-rich splicing factor RS41 
 ppo-u.5   7492794   serine/arginine-rich splicing factor RS31 
 ppo-u.5   7494037   serine/arginine-rich splicing factor RS41 
 ppo-u.5   7482121   serine/arginine-rich splicing factor RS40 
 mtr-u.5   25500953   serine/arginine-rich splicing factor RS41 
 mtr-u.5   11422261   serine/arginine-rich splicing factor RS40 
 mtr-u.5   11445062   serine/arginine-rich splicing factor RS31 

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Top 50 coexpressed genes to 542174 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542174 (zma-u.5 coexpression data)

CoexMap"542174"


zmaLOC542174 | Entrez gene ID : 542174      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03040 [list] [network] Spliceosome (506 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001335615.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001335615.2)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for NP_001335615.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542174

.
zma-r.6
for
542174

.
zma-m.5
for
542174

.
zma-u.5
for
100193841

.
zma-u.5
for
542693

.
zma-u.5
for
100192821

.
osa-u.5
for
4334964

.
osa-u.5
for
4328133

.
ath-u.5
for
RS31a

.
ath-u.5
for
RS31

.
ath-u.5
for
RS40

.
gma-u.5
for
100781534

.
gma-u.5
for
100815452

.
gma-u.5
for
100801043

.
sly-u.5
for
101246991

.
sly-u.5
for
101263057

.
sly-u.5
for
101264097

.
vvi-u.5
for
100255597

.
vvi-u.5
for
100255266

.
vvi-u.5
for
100262670

.
ppo-u.5
for
7492794

.
ppo-u.5
for
7494037

.
ppo-u.5
for
7482121

.
mtr-u.5
for
25500953

.
mtr-u.5
for
11422261

.
mtr-u.5
for
11445062

.


Ortholog ID: 1146
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RS31 RS31a LOC100797709 LOC100801043 LOC101246991 LOC101258786 LOC4334964 LOC4328133 LOC100193841 LOC100192821 LOC103857154 LOC103866451 LOC100262670 LOC100255266 LOC7454468 LOC7482121 LOC25483279 LOC25500953 LOC123094071 LOC123135841 LOC123431480 LOC123450013 LOC107916625 LOC107948157 LOC106418442 LOC106450491 CHLRE_16g674250v5 LOC8055045 LOC8059482 LOC102598769 LOC102593185 LOC102619264 LOC102609625 LOC100825680 LOC100825761 LOC107802667 LOC107779376
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 uncharacterized LOC100193841 uncharacterized LOC100192821 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS40 uncharacterized LOC25483279 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS31 uncharacterized protein serine/arginine-rich splicing factor RS41 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31-like serine/arginine-rich splicing factor RS41-like serine/arginine-rich splicing factor RS40 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS31 serine/arginine-rich splicing factor RS41 uncharacterized LOC107779376
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
sly03015 mRNA surveillance pathway 5
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 5
zma03083 Polycomb repressive complex 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 10
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00460 Cyanoamino acid metabolism 2
hvu00500 Starch and sucrose metabolism 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre04141 Protein processing in endoplasmic reticulum 5
cre03060 Protein export 2
cre04145 Phagosome 2
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03015 mRNA surveillance pathway 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 5
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825359 819273 100797709 100801043 101246991 101258786 4334964 4328133 100193841 100192821 103857154 103866451 100262670 100255266 7454468 7482121 25483279 25500953 123094071 123135841 123431480 123450013 107916625 107948157 106418442 106450491 5721439 8055045 8059482 102598769 102593185 102619264 102609625 100825680 100825761 107802667 107779376
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