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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100193009   RNA-binding (RRM/RBD/RNP motifs) family protein 
 zma-r.6   100193009   RNA-binding (RRM/RBD/RNP motifs) family protein 
 zma-m.5   100193009   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sbi-r.1   8066102   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4344522   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123169327   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123159497   28 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123147546   28 kDa ribonucleoprotein, chloroplastic 
 hvu-r.1   123407255   28 kDa ribonucleoprotein, chloroplastic 
 bdi-r.1   100823068   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT1G01080   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100803098   28 kDa ribonucleoprotein, chloroplastic-like 
 gma-u.5   100792560   33 kDa ribonucleoprotein, chloroplastic 
 gma-u.5   100785171   splicing factor U2AF 59 kDa subunit 
 bra-r.6   103844620   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7455363   28 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106370898   31 kDa ribonucleoprotein, chloroplastic-like 
 bna-r.1   106400476   31 kDa ribonucleoprotein, chloroplastic 

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Top 50 coexpressed genes to 100193009 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100193009 (zma-u.5 coexpression data)

CoexMap"100193009"


zmaLOC100193009 | Entrez gene ID : 100193009      
Species zma sbi osa tae hvu bdi ath gma bra ppo bna vvi sot sly nta cre mtr ghi cit
Paralog 3 1 1 3 1 1 1 3 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (20 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (153 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (346 genes)  IEA  
Protein NP_001131649.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for NP_001131649.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001131649.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100193009
zma-r.6
for
100193009
zma-m.5
for
100193009
sbi-r.1
for
8066102
osa-u.5
for
4344522
tae-r.2
for
123169327
tae-r.2
for
123159497
tae-r.2
for
123147546
hvu-r.1
for
123407255
bdi-r.1
for
100823068
ath-u.5
for
AT1G01080
gma-u.5
for
100803098
gma-u.5
for
100792560
gma-u.5
for
100785171
bra-r.6
for
103844620
ppo-u.5
for
7455363
bna-r.1
for
106370898
bna-r.1
for
106400476


Ortholog ID: 12694
Species zma sbi osa tae tae tae hvu bdi ath gma gma gma bra ppo bna bna
Symbol LOC100193009 LOC8066102 LOC4344522 LOC123169327 LOC123159497 LOC123147546 LOC123407255 LOC100823068 AT1G01080 LOC100803098 LOC100792560 LOC100785171 LOC103844620 LOC7455363 LOC106370898 LOC106400476
Function* RNA-binding (RRM/RBD/RNP motifs) family protein 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein 28 kDa ribonucleoprotein, chloroplastic-like 33 kDa ribonucleoprotein, chloroplastic splicing factor U2AF 59 kDa subunit 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like 31 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
bna03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100193009 8066102 4344522 123169327 123159497 123147546 123407255 100823068 839463 100803098 100792560 100785171 103844620 7455363 106370898 106400476
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