ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100193303	uncharacterized LOC100193303
zma-r.6	100193303	uncharacterized LOC100193303
zma-m.5	100193303	uncharacterized LOC100193303
zma-u.5	100381512	Jasmonic acid-amido synthetase JAR1
zma-u.5	103649563	probable indole-3-acetic acid-amido synthetase GH3.12
zma-u.5	100280367	uncharacterized LOC100280367
osa-u.5	4324650	jasmonoyl--L-amino acid synthetase GH3.3-like
osa-u.5	107275638	probable indole-3-acetic acid-amido synthetase GH3.12
osa-u.5	4339756	jasmonic acid-amido synthetase JAR1-like
ath-u.5	JAR1	Auxin-responsive GH3 family protein
gma-u.5	100806209	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100794598	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100777944	jasmonoyl--L-amino acid synthetase JAR4
sly-u.5	GH3-1	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-21	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-5	putative indole-3-acetic acid-amido synthetase GH3.5
vvi-u.5	100251627	jasmonoyl--L-amino acid synthetase JAR4
ppo-u.5	7494139	jasmonoyl--L-amino acid synthetase JAR4
ppo-u.5	7497237	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	25500734	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	11431770	jasmonoyl--L-amino acid synthetase JAR4
mtr-u.5	25500738	jasmonoyl--L-amino acid synthetase JAR6

Top 50 coexpressed genes to 100193303 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100193303 (zma-u.5 coexpression data)

CoexMap"100193303"

[Cytoscape]

Annotation

functional annotation

KEGG

zma04075 [list] [network] Plant hormone signal transduction (537 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(5465 genes)

IEA

GO MF

GO:0016881 [list] [network] acid-amino acid ligase activity

(28 genes)

IEA

Protein

NP_001345631.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3

(predict for NP_001345631.1)

Subcellular
localization
TargetP

other 6

(predict for NP_001345631.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100193303	zma-r.6 for 100193303	zma-m.5 for 100193303	zma-u.5 for 100381512	zma-u.5 for 103649563	zma-u.5 for 100280367	osa-u.5 for 4324650	osa-u.5 for 107275638	osa-u.5 for 4339756	ath-u.5 for JAR1	gma-u.5 for 100806209	gma-u.5 for 100794598	gma-u.5 for 100777944	sly-u.5 for GH3-1	sly-u.5 for GH3-21	sly-u.5 for GH3-5	vvi-u.5 for 100251627	ppo-u.5 for 7494139	ppo-u.5 for 7497237	mtr-u.5 for 25500734	mtr-u.5 for 11431770	mtr-u.5 for 25500738

Ortholog

Ortholog ID: 1796

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

JAR1

GH3-13

GH3-12

Function^*

uncharacterized LOC100193303

probable indole-3-acetic acid-amido synthetase GH3.12

jasmonic acid-amido synthetase JAR1

jasmonoyl--L-amino acid synthetase GH3.3-like

jasmonic acid-amido synthetase JAR1-like

jasmonoyl--L-amino acid synthetase GH3.5

jasmonoyl--L-amino acid synthetase GH3.3

jasmonoyl--L-amino acid synthetase GH3.5

jasmonoyl--L-amino acid synthetase GH3.3-like

jasmonic acid-amido synthetase JAR1

jasmonic acid-amido synthetase JAR2

Auxin-responsive GH3 family protein