ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100216577	uncharacterized LOC100216577
zma-r.6	100216577	uncharacterized LOC100216577
zma-u.5	103654814	coatomer subunit beta'-2-like
zma-u.5	100383977	uncharacterized LOC100383977
zma-u.5	103647866	coatomer subunit beta'-1
osa-u.5	4328694	coatomer subunit beta'-2-like
osa-u.5	4340097	coatomer subunit beta'-1-like
ath-u.5	AT3G15980	Coatomer, beta' subunit
ath-u.5	AT1G52360	Coatomer, beta' subunit
ath-u.5	AT1G79990	coatomer subunit beta-2
gma-u.5	106794271	coatomer subunit beta'-2
gma-u.5	100818132	coatomer subunit beta'-2
gma-u.5	100797508	coatomer subunit beta'-2
sly-u.5	101247999	coatomer subunit beta'-2
sly-u.5	101264409	coatomer subunit beta'-1
sly-u.5	101247229	coatomer subunit beta'-2
vvi-u.5	100247411	coatomer subunit beta'-1
ppo-u.5	7483508	coatomer subunit beta'-2
ppo-u.5	7472972	coatomer subunit beta'-1
mtr-u.5	25491385	coatomer subunit beta'-2
mtr-u.5	25487934	coatomer subunit beta'-2
mtr-u.5	25487932	coatomer subunit beta'-3

Top 50 coexpressed genes to 100216577 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100216577 (zma-u.5 coexpression data)

CoexMap"100216577"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(46 genes)	IEA
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(61 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(111 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(303 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(34 genes)

IEA

GO MF

GO:0005198 [list] [network] structural molecule activity	(681 genes)	IEA
GO:0005515 [list] [network] protein binding	(4389 genes)	IEA

Protein

NP_001349372.1 [sequence] [blastp]
XP_035815285.1 [sequence] [blastp]
XP_035815286.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, nucl 2, cyto 2, cyto_nucl 2, plas 1, chlo_mito 1, cyto_E.R. 1	(predict for NP_001349372.1)
chlo 2, nucl 2, cyto 2, cyto_nucl 2, plas 1, E.R. 1, E.R._plas 1	(predict for XP_035815285.1)
cyto 4, E.R. 3, cyto_nucl 3	(predict for XP_035815286.1)

Subcellular
localization
TargetP

mito 6, other 5	(predict for NP_001349372.1)
mito 6, other 5	(predict for XP_035815285.1)
other 6	(predict for XP_035815286.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100216577	zma-r.6 for 100216577	zma-u.5 for 103654814	zma-u.5 for 100383977	zma-u.5 for 103647866	osa-u.5 for 4328694	osa-u.5 for 4340097	ath-u.5 for AT3G15980	ath-u.5 for AT1G52360	ath-u.5 for AT1G79990	gma-u.5 for 106794271	gma-u.5 for 100818132	gma-u.5 for 100797508	sly-u.5 for 101247999	sly-u.5 for 101264409	sly-u.5 for 101247229	vvi-u.5 for 100247411	ppo-u.5 for 7483508	ppo-u.5 for 7472972	mtr-u.5 for 25491385	mtr-u.5 for 25487934	mtr-u.5 for 25487932

Ortholog

Ortholog ID: 971

Species

zma

sbi

osa

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100216577

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-1-like

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta-2

Coatomer, beta' subunit

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-3

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-3

coatomer subunit beta'-2

coatomer subunit beta'-3-like

coatomer subunit beta'-2

coatomer subunit beta'-2-like

coatomer subunit beta'-1-like

coatomer subunit beta'-3-like

coatomer subunit beta'-2-like

coatomer subunit beta'-1

coatomer subunit beta'-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	5
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2
sbi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04142	Lysosome	2
hvu05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04144	Endocytosis	2
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	4
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi00902	Monoterpenoid biosynthesis	2
vvi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	4
ppo05100	Bacterial invasion of epithelial cells	3
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04144	Endocytosis	3
mtr05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7
bna03060	Protein export	3
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	5
sot04141	Protein processing in endoplasmic reticulum	4
sot04142	Lysosome	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	6
cit04626	Plant-pathogen interaction	3
cit00071	Fatty acid degradation	3
cit00350	Tyrosine metabolism	3
cit00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04144	Endocytosis	3
cit05100	Bacterial invasion of epithelial cells	2
cit04142	Lysosome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4

Expression

Expression pattern

Entrez Gene ID^*

100216577

103638095

8082944

8065049

4340097

123412026

123404728

100823641

100837884

844339

820842

106794271

100807969

101264409

101248561

103840347

103868507

100256305

7472972

7483508

25487932

25487934

107944309

107951998

106404097

106405924

102604581

102603830

102622607

102622899

107788062

107771428

5727962

The preparation time of this page was 0.2 [sec].


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	3	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100216577 (zma-u.5 coexpression data)

Top 50 enrichment test to 100216577 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**