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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100242258   DEAD-box ATP-dependent RNA helicase 27 
 vvi-r.5   100242258   DEAD-box ATP-dependent RNA helicase 27 
 ath-u.5   AT3G18600   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   AT5G65900   DEA(D/H)-box RNA helicase family protein 
 gma-u.5   100798885   DEAD-box ATP-dependent RNA helicase 27 
 gma-u.5   100798290   DEAD-box ATP-dependent RNA helicase 27 
 gma-u.5   100797375   DEAD-box ATP-dependent RNA helicase 27 
 bra-r.6   103837961   DEAD-box ATP-dependent RNA helicase 51 
 bra-r.6   103859759   DEAD-box ATP-dependent RNA helicase 51 
 bra-r.6   103874030   DEAD-box ATP-dependent RNA helicase 27 
 ppo-u.5   18102018   DEAD-box ATP-dependent RNA helicase 51-like 
 ppo-u.5   7468000   DEAD-box ATP-dependent RNA helicase 51 
 mtr-u.5   25486792   DEAD-box ATP-dependent RNA helicase 27 
 mtr-u.5   11441584   DEAD-box ATP-dependent RNA helicase 27 
 mtr-u.5   11438740   DEAD-box ATP-dependent RNA helicase 51 
 ghi-r.1   107953363   DEAD-box ATP-dependent RNA helicase 51 
 ghi-r.1   107926589   DEAD-box ATP-dependent RNA helicase 51 
 ghi-r.1   107887059   DEAD-box ATP-dependent RNA helicase 51 
 bna-r.1   106439550   DEAD-box ATP-dependent RNA helicase 51 
 bna-r.1   106391029   DEAD-box ATP-dependent RNA helicase 51-like 
 bna-r.1   125575855   DEAD-box ATP-dependent RNA helicase 27-like 
 cit-r.1   102619669   DEAD-box ATP-dependent RNA helicase 51 
 sly-u.5   101245343   DEAD-box ATP-dependent RNA helicase 51 
 sot-r.1   102597715   DEAD-box ATP-dependent RNA helicase 51-like 
 nta-r.1   107794494   DEAD-box ATP-dependent RNA helicase 51 
 nta-r.1   107806417   DEAD-box ATP-dependent RNA helicase 27 
 osa-u.5   4334469   DEAD-box ATP-dependent RNA helicase 27-like 
 zma-u.5   100501728   DEAD-box ATP-dependent RNA helicase 51 
 zma-u.5   103640803   DEAD-box ATP-dependent RNA helicase 27 
 tae-r.2   123120056   DEAD-box ATP-dependent RNA helicase 27 
 hvu-r.1   123399846   DEAD-box ATP-dependent RNA helicase 27 
 sbi-r.1   8066029   putative DEAD-box ATP-dependent RNA helicase 51 
 sbi-r.1   8061145   DEAD-box ATP-dependent RNA helicase 27 
 bdi-r.1   104584763   DEAD-box ATP-dependent RNA helicase 27 
 cre-r.1   CHLRE_07g314900v5   uncharacterized protein 

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Top 50 coexpressed genes to 100242258 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100242258 (vvi-u.5 coexpression data)

CoexMap"100242258"


vviLOC100242258 | Entrez gene ID : 100242258      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 3 3 2 3 3 3 1 1 1 2 1 2 1 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (24 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (170 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (56 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3261 genes)  IEA  
Protein XP_002275026.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_002275026.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_002275026.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100242258
vvi-r.5
for
100242258
ath-u.5
for
AT3G18600
ath-u.5
for
AT5G65900
gma-u.5
for
100798885
gma-u.5
for
100798290
gma-u.5
for
100797375
bra-r.6
for
103837961
bra-r.6
for
103859759
bra-r.6
for
103874030
ppo-u.5
for
18102018
ppo-u.5
for
7468000
mtr-u.5
for
25486792
mtr-u.5
for
11441584
mtr-u.5
for
11438740
ghi-r.1
for
107953363
ghi-r.1
for
107926589
ghi-r.1
for
107887059
bna-r.1
for
106439550
bna-r.1
for
106391029
bna-r.1
for
125575855
cit-r.1
for
102619669
sly-u.5
for
101245343
sot-r.1
for
102597715
nta-r.1
for
107794494
nta-r.1
for
107806417
osa-u.5
for
4334469
zma-u.5
for
100501728
zma-u.5
for
103640803
tae-r.2
for
123120056
hvu-r.1
for
123399846
sbi-r.1
for
8066029
sbi-r.1
for
8061145
bdi-r.1
for
104584763
cre-r.1
for
CHLRE_07g314900v5


Ortholog ID: 3222
Species vvi ath ath gma gma gma bra bra bra ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit sly sot nta nta osa zma zma tae hvu sbi sbi bdi cre
Symbol LOC100242258 AT3G18600 AT5G65900 LOC100798885 LOC100798290 LOC100797375 LOC103837961 LOC103859759 LOC103869547 LOC18102018 LOC7468000 LOC25486792 LOC11441584 LOC11438740 LOC107926589 LOC107887059 LOC107949736 LOC106439550 LOC106348170 LOC106412129 LOC102619669 LOC101245343 LOC102597715 LOC107794494 LOC107806417 LOC4334469 LOC100501728 LOC103640803 LOC123102847 LOC123399846 LOC8066029 LOC8061145 LOC104584763 CHLRE_07g314900v5
Function* DEAD-box ATP-dependent RNA helicase 27 P-loop containing nucleoside triphosphate hydrolases superfamily protein DEA(D/H)-box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 putative DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00908 Zeatin biosynthesis 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00380 Tryptophan metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100242258 821391 836719 100798885 100798290 100797375 103837961 103859759 103869547 18102018 7468000 25486792 11441584 11438740 107926589 107887059 107949736 106439550 106348170 106412129 102619669 101245343 102597715 107794494 107806417 4334469 100501728 103640803 123102847 123399846 8066029 8061145 104584763 5726525
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