ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100245471	putative E3 ubiquitin-protein ligase LIN-1
vvi-r.5	100245471	putative E3 ubiquitin-protein ligase LIN-1
gma-u.5	100776142	putative E3 ubiquitin-protein ligase LIN-1
ppo-u.5	7493976	putative E3 ubiquitin-protein ligase LIN-1
mtr-u.5	11418360	putative E3 ubiquitin-protein ligase LIN
sly-u.5	101245353	putative E3 ubiquitin-protein ligase LIN-1

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(272 genes)

IEA

GO CC

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(280 genes)	IEA
GO:0005515 [list] [network] protein binding	(4232 genes)	IEA

Protein

XP_002279863.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_002279863.2)

Subcellular
localization
TargetP

other 6

(predict for XP_002279863.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100245471	vvi-r.5 for 100245471	gma-u.5 for 100776142	ppo-u.5 for 7493976	mtr-u.5 for 11418360	sly-u.5 for 101245353

Ortholog ID: 14547

Species

vvi

gma

ppo

mtr

ghi

sly

sot

nta

Symbol

Function^*

putative E3 ubiquitin-protein ligase LIN-1

putative E3 ubiquitin-protein ligase LIN

putative E3 ubiquitin-protein ligase LIN-1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta00073	Cutin, suberine and wax biosynthesis	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00480	Glutathione metabolism	3
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100245471

100776142

7493976

11418360

121214050

107957989

101245353

102580538

107776283

107820791

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100245471 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100245471 (vvi-u.5 coexpression data)


Species	vvi	gma	ppo	mtr	sly	bdi	hvu	bra	cit	bna	ath	sbi	ghi	osa	sot	nta	cre	tae	zma
Paralog	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100245471 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100245471 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**