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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100248256   DNA topoisomerase 3-alpha 
 vvi-r.5   100248256   DNA topoisomerase 3-alpha 
 ath-u.5   TOP3A   topoisomerase 3alpha 
 gma-u.5   100818971   DNA topoisomerase 3-alpha 
 mtr-u.5   11428648   DNA topoisomerase 3-alpha 
 sly-u.5   101262415   DNA topoisomerase 3-alpha 
 osa-u.5   9269718   DNA topoisomerase 3-alpha 
 zma-u.5   100273582   DNA topoisomerase 3-alpha 

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Top 50 coexpressed genes to 100248256 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100248256 (vvi-u.5 coexpression data)

CoexMap"100248256"


vviLOC100248256 | Entrez gene ID : 100248256    
Species vvi ath gma mtr sly osa zma hvu bna cit bra ghi ppo sbi bdi nta tae cre sot
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03440 [list] [network] Homologous recombination (47 genes)
vvi03460 [list] [network] Fanconi anemia pathway (40 genes)
GO BP
GO:0006265 [list] [network] DNA topological change  (12 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (294 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (6 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (811 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1602 genes)  IEA  
Protein XP_010649353.1 [sequence] [blastp]
XP_010649354.1 [sequence] [blastp]
XP_059592523.1 [sequence] [blastp]
XP_059592524.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_010649353.1)
nucl 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2  (predict for XP_010649354.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_059592523.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_059592524.1)
Subcellular
localization
TargetP
other 2  (predict for XP_010649353.1)
other 2  (predict for XP_010649354.1)
other 2  (predict for XP_059592523.1)
other 2  (predict for XP_059592524.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100248256
vvi-r.5
for
100248256
ath-u.5
for
TOP3A
gma-u.5
for
100818971
mtr-u.5
for
11428648
sly-u.5
for
101262415
osa-u.5
for
9269718
zma-u.5
for
100273582


Ortholog ID: 11017
Species vvi ath gma bra mtr ghi ghi bna bna cit sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC100248256 TOP3A LOC100818971 LOC103855218 LOC11428648 LOC107911689 LOC107922919 LOC106382916 LOC125604751 LOC102618169 LOC101262415 LOC102584797 LOC107824417 LOC107772126 LOC9269718 LOC100273582 LOC123093258 LOC123449524 LOC8082142 LOC100833828
Function* DNA topoisomerase 3-alpha topoisomerase 3alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha-like DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03460 Fanconi anemia pathway 3
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 2
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 3
sly04120 Ubiquitin mediated proteolysis 2
sly03430 Mismatch repair 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta00531 Glycosaminoglycan degradation 2
nta00604 Glycosphingolipid biosynthesis - ganglio series 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 5
zma03030 DNA replication 5
zma03410 Base excision repair 4
zma03420 Nucleotide excision repair 4
zma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 4
tae00230 Purine metabolism 3
tae03010 Ribosome 3
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100248256 836513 100818971 103855218 11428648 107911689 107922919 106382916 125604751 102618169 101262415 102584797 107824417 107772126 9269718 100273582 123093258 123449524 8082142 100833828
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