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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922919   DNA topoisomerase 3-alpha 
 ghi-r.1   107911689   DNA topoisomerase 3-alpha 
 ath-u.5   TOP3A   topoisomerase 3alpha 
 bra-r.6   103855218   DNA topoisomerase 3-alpha 
 bna-r.1   106405079   DNA topoisomerase 3-alpha 
 bna-r.1   106382916   DNA topoisomerase 3-alpha 
 bna-r.1   125604751   DNA topoisomerase 3-alpha-like 
 cit-r.1   102618169   DNA topoisomerase 3-alpha 
 gma-u.5   100818971   DNA topoisomerase 3-alpha 
 vvi-u.5   100248256   DNA topoisomerase 3-alpha 
 mtr-u.5   11428648   DNA topoisomerase 3-alpha 
 sly-u.5   101262415   DNA topoisomerase 3-alpha 
 sot-r.1   102584797   DNA topoisomerase 3-alpha 
 nta-r.1   107772126   DNA topoisomerase 3-alpha 
 nta-r.1   107824417   DNA topoisomerase 3-alpha 
 osa-u.5   9269718   DNA topoisomerase 3-alpha 
 zma-u.5   100273582   DNA topoisomerase 3-alpha 
 tae-r.2   123093258   DNA topoisomerase 3-alpha 
 hvu-r.1   123449524   DNA topoisomerase 3-alpha 
 sbi-r.1   8082142   DNA topoisomerase 3-alpha 
 bdi-r.1   100833828   DNA topoisomerase 3-alpha 

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Top 50 coexpressed genes to 107922919 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922919 (ghi-r.1 coexpression data)

CoexMap"107922919"


ghiLOC107922919 | Entrez gene ID : 107922919    
Species ghi ath bra bna cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03440 [list] [network] Homologous recombination (106 genes)
ghi03460 [list] [network] Fanconi anemia pathway (91 genes)
GO BP
GO:0006265 [list] [network] DNA topological change  (19 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (873 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (10 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016708613.2 [sequence] [blastp]
XP_040936697.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto_nucl 3,  cyto 1,  mito 1,  cysk 1  (predict for XP_016708613.2)
chlo 4,  nucl 3,  mito 1,  cyto 1,  plas 1,  cysk 1,  cyto_mito 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_040936697.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_016708613.2)
chlo 7,  other 3  (predict for XP_040936697.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922919
ghi-r.1
for
107911689
ath-u.5
for
TOP3A
bra-r.6
for
103855218
bna-r.1
for
106405079
bna-r.1
for
106382916
bna-r.1
for
125604751
cit-r.1
for
102618169
gma-u.5
for
100818971
vvi-u.5
for
100248256
mtr-u.5
for
11428648
sly-u.5
for
101262415
sot-r.1
for
102584797
nta-r.1
for
107772126
nta-r.1
for
107824417
osa-u.5
for
9269718
zma-u.5
for
100273582
tae-r.2
for
123093258
hvu-r.1
for
123449524
sbi-r.1
for
8082142
bdi-r.1
for
100833828


Ortholog ID: 11017
Species ghi ghi ath bra bna bna bna cit gma vvi mtr sly sot nta nta osa zma tae hvu sbi bdi
Symbol LOC107922919 LOC107911689 TOP3A LOC103855218 LOC106405079 LOC106382916 LOC125604751 LOC102618169 LOC100818971 LOC100248256 LOC11428648 LOC101262415 LOC102584797 LOC107772126 LOC107824417 LOC9269718 LOC100273582 LOC123093258 LOC123449524 LOC8082142 LOC100833828
Function* DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha topoisomerase 3alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha-like DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha DNA topoisomerase 3-alpha
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 6
bna03440 Homologous recombination 5
bna03030 DNA replication 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03460 Fanconi anemia pathway 3
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 2
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 3
sly04120 Ubiquitin mediated proteolysis 2
sly03430 Mismatch repair 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta00531 Glycosaminoglycan degradation 2
nta00604 Glycosphingolipid biosynthesis - ganglio series 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 5
zma03030 DNA replication 5
zma03410 Base excision repair 4
zma03420 Nucleotide excision repair 4
zma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 4
tae00230 Purine metabolism 3
tae03010 Ribosome 3
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107922919 107911689 836513 103855218 106405079 106382916 125604751 102618169 100818971 100248256 11428648 101262415 102584797 107772126 107824417 9269718 100273582 123093258 123449524 8082142 100833828
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