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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100248358   DNA-directed RNA polymerase II subunit RPB7 
 vvi-r.5   100248358   DNA-directed RNA polymerase II subunit RPB7 
 vvi-m.5   100248358   DNA-directed RNA polymerase II subunit RPB7 
 ath-u.5   NRPB7   DNA-directed RNA polymerase II 
 gma-u.5   100793057   DNA-directed RNA polymerase II subunit RPB7 
 ppo-u.5   7491348   DNA-directed RNA polymerase II subunit RPB7 
 mtr-u.5   11407767   DNA-directed RNA polymerase II subunit RPB7 
 sly-u.5   101259753   DNA-directed RNA polymerase II subunit RPB7 
 osa-u.5   4338726   DNA-directed RNA polymerase II subunit RPB7 
 zma-u.5   100283223   DNA-directed RNA polymerase II 19 kDa polypeptide 

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Top 50 coexpressed genes to 100248358 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100248358 (vvi-u.5 coexpression data)

CoexMap"100248358"


vviLOC100248358 | Entrez gene ID : 100248358      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03020 [list] [network] RNA polymerase (51 genes)
vvi03420 [list] [network] Nucleotide excision repair (68 genes)
GO BP
GO:0060213 [list] [network] positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  (1 genes)  IEA  
GO:0045948 [list] [network] positive regulation of translational initiation  (2 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (27 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (199 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (17 genes)  IEA  
GO:0000932 [list] [network] P-body  (39 genes)  IEA  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (10 genes)  IEA  
GO:0031369 [list] [network] translation initiation factor binding  (13 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (55 genes)  IEA  
Protein XP_002282298.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1  (predict for XP_002282298.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for XP_002282298.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100248358
vvi-r.5
for
100248358
vvi-m.5
for
100248358
ath-u.5
for
NRPB7
gma-u.5
for
100793057
ppo-u.5
for
7491348
mtr-u.5
for
11407767
sly-u.5
for
101259753
osa-u.5
for
4338726
zma-u.5
for
100283223


Ortholog ID: 6107
Species vvi ath gma bra ppo mtr ghi ghi bna cit sly sot nta nta osa zma tae tae hvu sbi sbi bdi cre
Symbol LOC100248358 NRPB7 LOC100793057 LOC103851602 LOC7491348 LOC11407767 LOC107932501 LOC107953099 LOC106387236 LOC102612216 LOC101259753 LOC102590696 LOC107803663 LOC107784900 LOC4338726 LOC100283223 LOC123181946 LOC123055038 LOC123441807 LOC8076875 LOC8078788 LOC100821003 CHLRE_16g667750v5
Function* DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit 7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit 7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II 19 kDa polypeptide DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 4
ppo03020 RNA polymerase 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit03010 Ribosome 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03020 RNA polymerase 3
sly03010 Ribosome 2
sly03018 RNA degradation 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta03010 Ribosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 4
bdi00190 Oxidative phosphorylation 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03013 Nucleocytoplasmic transport 2
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100248358 836036 100793057 103851602 7491348 11407767 107932501 107953099 106387236 102612216 101259753 102590696 107803663 107784900 4338726 100283223 123181946 123055038 123441807 8076875 8078788 100821003 5717707
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