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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8076875   DNA-directed RNA polymerase II subunit RPB7 
 zma-u.5   100283223   DNA-directed RNA polymerase II 19 kDa polypeptide 
 osa-u.5   4338726   DNA-directed RNA polymerase II subunit RPB7 
 ath-u.5   NRPB7   DNA-directed RNA polymerase II 
 gma-u.5   100793057   DNA-directed RNA polymerase II subunit RPB7 
 sly-u.5   101259753   DNA-directed RNA polymerase II subunit RPB7 
 vvi-u.5   100248358   DNA-directed RNA polymerase II subunit RPB7 
 ppo-u.5   7491348   DNA-directed RNA polymerase II subunit RPB7 
 mtr-u.5   11407767   DNA-directed RNA polymerase II subunit RPB7 

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Top 50 coexpressed genes to 8076875 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8076875 (sbi-r.1 coexpression data)

CoexMap"8076875"


sbiLOC8076875 | Entrez gene ID : 8076875    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03020 [list] [network] RNA polymerase (56 genes)
sbi03420 [list] [network] Nucleotide excision repair (89 genes)
GO BP
GO:0060213 [list] [network] positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  (2 genes)  IEA  
GO:0045948 [list] [network] positive regulation of translational initiation  (3 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (34 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (215 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (31 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (14 genes)  IEA  
GO:0031369 [list] [network] translation initiation factor binding  (14 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (68 genes)  IEA  
Protein XP_002441063.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for XP_002441063.1)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for XP_002441063.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8076875

.
zma-u.5
for
100283223

.
osa-u.5
for
4338726

.
ath-u.5
for
NRPB7

.
gma-u.5
for
100793057

.
sly-u.5
for
101259753

.
vvi-u.5
for
100248358

.
ppo-u.5
for
7491348

.
mtr-u.5
for
11407767

.


Ortholog ID: 6107
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol NRPB7 LOC100793057 LOC101259753 LOC4338726 LOC100283223 LOC103851602 LOC100248358 LOC7491348 LOC11407767 LOC123181946 LOC123055038 LOC123441807 LOC107932501 LOC107953099 LOC106387236 CHLRE_16g667750v5 LOC8076875 LOC8078788 LOC102590696 LOC102612216 LOC100821003 LOC107803663 LOC107784900
Function* DNA-directed RNA polymerase II DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II 19 kDa polypeptide DNA-directed RNA polymerase II subunit 7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit 7 uncharacterized protein DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03020 RNA polymerase 3
sly03010 Ribosome 2
sly03018 RNA degradation 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 4
ppo03020 RNA polymerase 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03013 Nucleocytoplasmic transport 2
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit03010 Ribosome 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 4
bdi00190 Oxidative phosphorylation 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta03010 Ribosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836036 100793057 101259753 4338726 100283223 103851602 100248358 7491348 11407767 123181946 123055038 123441807 107932501 107953099 106387236 5717707 8076875 8078788 102590696 102612216 100821003 107803663 107784900
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