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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100248849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 vvi-r.5   100248849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 ath-u.5   AT2G42920   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100804411   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 bra-r.6   103866680   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 mtr-u.5   11425849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 ghi-r.1   107922768   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 ghi-r.1   107911720   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 bna-r.1   125585033   pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like 
 bna-r.1   106377416   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 cit-r.1   102608650   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 sly-u.5   101259507   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 sot-r.1   102604439   pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like 
 nta-r.1   107799613   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 nta-r.1   142162882   pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like 
 osa-u.5   107276234   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 hvu-r.1   123452142   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 sbi-r.1   8062242   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 bdi-r.1   100839173   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 

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Top 50 coexpressed genes to 100248849 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100248849 (vvi-u.5 coexpression data)

CoexMap"100248849"


vviLOC100248849 | Entrez gene ID : 100248849      
Species vvi ath gma bra mtr ghi bna cit sly sot nta osa hvu sbi bdi zma cre ppo tae
Paralog 2 1 1 1 1 2 2 1 1 1 2 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002279693.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  vacu 1,  golg 1  (predict for XP_002279693.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_002279693.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100248849
vvi-r.5
for
100248849
ath-u.5
for
AT2G42920
gma-u.5
for
100804411
bra-r.6
for
103866680
mtr-u.5
for
11425849
ghi-r.1
for
107922768
ghi-r.1
for
107911720
bna-r.1
for
125585033
bna-r.1
for
106377416
cit-r.1
for
102608650
sly-u.5
for
101259507
sot-r.1
for
102604439
nta-r.1
for
107799613
nta-r.1
for
142162882
osa-u.5
for
107276234
hvu-r.1
for
123452142
sbi-r.1
for
8062242
bdi-r.1
for
100839173


Ortholog ID: 11273
Species vvi ath gma bra mtr ghi ghi bna bna cit sly sot nta nta osa hvu sbi bdi
Symbol LOC100248849 AT2G42920 LOC100804411 LOC103866680 LOC11425849 LOC107922768 LOC107911720 LOC125585033 LOC106377416 LOC102608650 LOC101259507 LOC102604439 LOC107799613 LOC142162882 LOC107276234 LOC123452142 LOC8062242 LOC100839173
Function* pentatricopeptide repeat-containing protein At2g42920, chloroplastic Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00010 Glycolysis / Gluconeogenesis 2
gma01200 Carbon metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
sbi00730 Thiamine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100248849 818893 100804411 103866680 11425849 107922768 107911720 125585033 106377416 102608650 101259507 102604439 107799613 142162882 107276234 123452142 8062242 100839173
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