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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102608650   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 ath-u.5   AT2G42920   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   100804411   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 vvi-u.5   100248849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 mtr-u.5   11425849   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 sly-u.5   101259507   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 
 osa-u.5   107276234   pentatricopeptide repeat-containing protein At2g42920, chloroplastic 

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Top 50 coexpressed genes to 102608650 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102608650 (cit-r.1 coexpression data)

CoexMap"102608650"


citLOC102608650 | Entrez gene ID : 102608650    
Species cit ath gma vvi mtr sly osa bdi hvu bra bna ppo sbi ghi sot nta cre tae zma
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006484869.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_006484869.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006484869.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102608650
ath-u.5
for
AT2G42920
gma-u.5
for
100804411
vvi-u.5
for
100248849
mtr-u.5
for
11425849
sly-u.5
for
101259507
osa-u.5
for
107276234


Ortholog ID: 11273
Species cit ath bra ghi ghi bna bna gma vvi mtr sly sot nta nta osa hvu sbi bdi
Symbol LOC102608650 AT2G42920 LOC103866680 LOC107911720 LOC107922768 LOC125585033 LOC106377416 LOC100804411 LOC100248849 LOC11425849 LOC101259507 LOC102604439 LOC107799613 LOC142162882 LOC107276234 LOC123452142 LOC8062242 LOC100839173
Function* pentatricopeptide repeat-containing protein At2g42920, chloroplastic Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic pentatricopeptide repeat-containing protein At2g42920, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00010 Glycolysis / Gluconeogenesis 2
gma01200 Carbon metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi00920 Sulfur metabolism 3
sbi01320 Sulfur cycle 3
sbi00730 Thiamine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102608650 818893 103866680 107911720 107922768 125585033 106377416 100804411 100248849 11425849 101259507 102604439 107799613 142162882 107276234 123452142 8062242 100839173
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