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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100249480   upstream activation factor subunit spp27 
 vvi-r.5   100249480   upstream activation factor subunit spp27 
 vvi-u.5   100252274   upstream activation factor subunit spp27 
 ath-u.5   AT2G35605   SWIB/MDM2 domain superfamily protein 
 ath-u.5   AT3G03590   SWIB/MDM2 domain superfamily protein 
 ath-u.5   AT1G31760   SWIB/MDM2 domain superfamily protein 
 gma-u.5   100795307   upstream activation factor subunit UAF30 
 gma-u.5   100779127   protein TRI1 
 ppo-u.5   7482403   upstream activation factor subunit spp27 
 mtr-u.5   11407385   upstream activation factor subunit UAF30 
 sly-u.5   101253218   upstream activation factor subunit UAF30 
 sly-u.5   101249284   upstream activation factor subunit UAF30 
 osa-u.5   4328187   upstream activation factor subunit spp27 
 zma-u.5   100193662   uncharacterized LOC100193662 
 zma-u.5   100283921   uncharacterized LOC100283921 

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Top 50 coexpressed genes to 100249480 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100249480 (vvi-u.5 coexpression data)

CoexMap"100249480"


vviLOC100249480 | Entrez gene ID : 100249480      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 3 2 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
Protein XP_002270707.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  chlo_mito 3  (predict for XP_002270707.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_002270707.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100249480
vvi-r.5
for
100249480
vvi-u.5
for
100252274
ath-u.5
for
AT2G35605
ath-u.5
for
AT3G03590
ath-u.5
for
AT1G31760
gma-u.5
for
100795307
gma-u.5
for
100779127
ppo-u.5
for
7482403
mtr-u.5
for
11407385
sly-u.5
for
101253218
sly-u.5
for
101249284
osa-u.5
for
4328187
zma-u.5
for
100193662
zma-u.5
for
100283921


Ortholog ID: 5083
Species vvi vvi ath ath gma gma bra bra ppo mtr ghi ghi bna bna cit cit sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LOC100252274 LOC100249480 AT1G31760 AT2G35605 LOC100779127 LOC100795307 LOC103868936 LOC103855169 LOC7482403 LOC11407385 LOC107900687 LOC107936316 LOC106418692 LOC106381829 LOC102623572 LOC112495463 LOC101249284 LOC101253218 LOC107063144 LOC102600426 LOC107770935 LOC107793636 LOC4328187 LOC100283921 LOC100193662 LOC123136051 LOC123131983 LOC123401563 LOC8057506 LOC100827902
Function* upstream activation factor subunit spp27 upstream activation factor subunit spp27 SWIB/MDM2 domain superfamily protein SWIB/MDM2 domain superfamily protein protein TRI1 upstream activation factor subunit UAF30 upstream activation factor subunit UAF30 protein TRI1 upstream activation factor subunit spp27 upstream activation factor subunit UAF30 upstream activation factor subunit UAF30 upstream activation factor subunit UAF30 protein TRI1-like upstream activation factor subunit UAF30 upstream activation factor subunit UAF30 protein TRI1-like upstream activation factor subunit UAF30 upstream activation factor subunit UAF30 protein TRI1-like upstream activation factor subunit UAF30-like protein TRI1 upstream activation factor subunit UAF30-like upstream activation factor subunit spp27 uncharacterized LOC100283921 uncharacterized LOC100193662 protein TRI1 upstream activation factor subunit spp27 upstream activation factor subunit spp27-like protein TRI1 protein TRI1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
ath03030 DNA replication 4
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 5
cit04141 Protein processing in endoplasmic reticulum 4
cit03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
zma03040 Spliceosome 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03040 Spliceosome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100252274 100249480 840063 818127 100779127 100795307 103868936 103855169 7482403 11407385 107900687 107936316 106418692 106381829 102623572 112495463 101249284 101253218 107063144 102600426 107770935 107793636 4328187 100283921 100193662 123136051 123131983 123401563 8057506 100827902
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