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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100249755   general transcription and DNA repair factor IIH subunit TFB1-1 
 vvi-r.5   100249755   general transcription and DNA repair factor IIH subunit TFB1-1 
 ath-u.5   AT3G61420   BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) 
 ath-u.5   AT1G55750   BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) 
 gma-u.5   100811780   general transcription and DNA repair factor IIH subunit TFB1-1 
 gma-u.5   100776016   general transcription and DNA repair factor IIH subunit TFB1-1 
 ppo-u.5   7466730   general transcription and DNA repair factor IIH subunit TFB1-1 
 mtr-u.5   11406928   general transcription and DNA repair factor IIH subunit TFB1-1 
 mtr-u.5   25496637   general transcription and DNA repair factor IIH subunit TFB1-1 
 ghi-r.1   107941978   general transcription and DNA repair factor IIH subunit TFB1-1 
 ghi-r.1   107953138   general transcription and DNA repair factor IIH subunit TFB1-1 
 bna-r.1   106393558   general transcription and DNA repair factor IIH subunit TFB1-1 
 bna-r.1   106354485   general transcription and DNA repair factor IIH subunit TFB1-1 
 cit-r.1   102606944   general transcription and DNA repair factor IIH subunit TFB1-1 
 sly-u.5   101251518   general transcription and DNA repair factor IIH subunit TFB1-1 
 sot-r.1   102603411   probable RNA polymerase II transcription factor B subunit 1-1 
 nta-r.1   107788649   general transcription and DNA repair factor IIH subunit TFB1-1 
 nta-r.1   107773286   general transcription and DNA repair factor IIH subunit TFB1-1-like 
 osa-u.5   4345313   general transcription and DNA repair factor IIH subunit TFB1-1 
 zma-u.5   100193949   uncharacterized LOC100193949 
 tae-r.2   123071897   general transcription and DNA repair factor IIH subunit TFB1-3 
 tae-r.2   123080216   general transcription and DNA repair factor IIH subunit TFB1-1 
 tae-r.2   123147380   general transcription and DNA repair factor IIH subunit TFB1-1 
 hvu-r.1   123408345   general transcription and DNA repair factor IIH subunit TFB1-1-like 
 hvu-r.1   123445165   general transcription and DNA repair factor IIH subunit TFB1-3-like 
 sbi-r.1   8076584   probable RNA polymerase II transcription factor B subunit 1-1 
 bdi-r.1   100845916   general transcription and DNA repair factor IIH subunit TFB1-1 
 cre-r.1   CHLRE_10g466550v5   uncharacterized protein 

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Top 50 coexpressed genes to 100249755 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100249755 (vvi-u.5 coexpression data)

CoexMap"100249755"


vviLOC100249755 | Entrez gene ID : 100249755      
Species vvi ath gma ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 2 2 2 1 2 2 2 1 1 1 2 1 1 3 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03022 [list] [network] Basal transcription factors (41 genes)
vvi03420 [list] [network] Nucleotide excision repair (68 genes)
GO BP
GO:0006360 [list] [network] transcription by RNA polymerase I  (9 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (31 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (59 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (4 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (9 genes)  IEA  
GO MF
Protein XP_002276057.1 [sequence] [blastp]
XP_059591343.1 [sequence] [blastp]
XP_059591344.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto_mito 3,  chlo 1,  nucl 1,  cyto 1,  cysk 1,  nucl_plas 1  (predict for XP_002276057.1)
mito 5,  cyto_mito 3,  chlo 1,  nucl 1,  cyto 1,  cysk 1,  nucl_plas 1  (predict for XP_059591343.1)
mito 4,  cyto_mito 3,  chlo 2,  nucl 1,  cyto 1,  cysk 1,  nucl_plas 1  (predict for XP_059591344.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_002276057.1)
other 7,  mito 3  (predict for XP_059591343.1)
other 7,  mito 3  (predict for XP_059591344.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100249755
vvi-r.5
for
100249755
ath-u.5
for
AT3G61420
ath-u.5
for
AT1G55750
gma-u.5
for
100811780
gma-u.5
for
100776016
ppo-u.5
for
7466730
mtr-u.5
for
11406928
mtr-u.5
for
25496637
ghi-r.1
for
107941978
ghi-r.1
for
107953138
bna-r.1
for
106393558
bna-r.1
for
106354485
cit-r.1
for
102606944
sly-u.5
for
101251518
sot-r.1
for
102603411
nta-r.1
for
107788649
nta-r.1
for
107773286
osa-u.5
for
4345313
zma-u.5
for
100193949
tae-r.2
for
123071897
tae-r.2
for
123080216
tae-r.2
for
123147380
hvu-r.1
for
123408345
hvu-r.1
for
123445165
sbi-r.1
for
8076584
bdi-r.1
for
100845916
cre-r.1
for
CHLRE_10g466550v5


Ortholog ID: 7262
Species vvi ath ath gma gma ppo mtr mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC100249755 AT3G61420 AT1G55750 LOC100811780 LOC100776016 LOC7466730 LOC11406928 LOC25496637 LOC107941978 LOC107953138 LOC106393558 LOC106354485 LOC102606944 LOC101251518 LOC102603411 LOC107788649 LOC107773286 LOC4345313 LOC100193949 LOC123071897 LOC123080216 LOC123147380 LOC123408345 LOC123445165 LOC8076584 LOC100845916 CHLRE_10g466550v5
Function* general transcription and DNA repair factor IIH subunit TFB1-1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 probable RNA polymerase II transcription factor B subunit 1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1-like general transcription and DNA repair factor IIH subunit TFB1-1 uncharacterized LOC100193949 general transcription and DNA repair factor IIH subunit TFB1-3 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1 general transcription and DNA repair factor IIH subunit TFB1-1-like general transcription and DNA repair factor IIH subunit TFB1-3-like probable RNA polymerase II transcription factor B subunit 1-1 general transcription and DNA repair factor IIH subunit TFB1-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
bna04518 Integrin signaling 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 4
bna04518 Integrin signaling 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03420 Nucleotide excision repair 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03022 Basal transcription factors 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100249755 825315 842024 100811780 100776016 7466730 11406928 25496637 107941978 107953138 106393558 106354485 102606944 101251518 102603411 107788649 107773286 4345313 100193949 123071897 123080216 123147380 123408345 123445165 8076584 100845916 5724197
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