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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100250416   protein COP1 SUPPRESSOR 2 
 vvi-r.5   100250416   protein COP1 SUPPRESSOR 2 
 vvi-m.5   100250416   protein COP1 SUPPRESSOR 2 
 ath-u.5   AT1G02330   integrator complex subunit-like protein 
 gma-u.5   100812323   uncharacterized LOC100812323 
 gma-u.5   100798791   protein COP1 SUPPRESSOR 2 
 bra-r.6   103844598   protein COP1 SUPPRESSOR 2 
 ppo-u.5   7486829   protein COP1 SUPPRESSOR 2 
 mtr-u.5   25484718   protein COP1 SUPPRESSOR 2 
 ghi-r.1   107912287   protein COP1 SUPPRESSOR 2 
 ghi-r.1   121209747   protein COP1 SUPPRESSOR 2 
 bna-r.1   BNAC05G01090D   protein COP1 SUPPRESSOR 2 
 bna-r.1   BNAA10G00980D   protein COP1 SUPPRESSOR 2 
 cit-r.1   102617043   hypothetical protein 
 sly-u.5   101252715   COP1 SUPPRESSOR 2-like protein 
 sot-r.1   102603035   uncharacterized protein C9orf78 
 nta-r.1   107778924   protein COP1 SUPPRESSOR 2 
 nta-r.1   107810621   protein COP1 SUPPRESSOR 2 
 osa-u.5   4332947   protein COP1 SUPPRESSOR 2 
 zma-u.5   100282469   uncharacterized LOC100282469 
 tae-r.2   123146274   protein COP1 SUPPRESSOR 2 
 tae-r.2   123146272   protein COP1 SUPPRESSOR 2 
 tae-r.2   123140008   protein COP1 SUPPRESSOR 2 
 hvu-r.1   123403053   protein COP1 SUPPRESSOR 2 
 sbi-r.1   8082281   uncharacterized protein C9orf78 homolog 
 bdi-r.1   100821850   protein COP1 SUPPRESSOR 2 
 cre-r.1   CHLRE_10g423350v5   uncharacterized protein 

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Top 50 coexpressed genes to 100250416 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100250416 (vvi-u.5 coexpression data)

CoexMap"100250416"


vviLOC100250416 | Entrez gene ID : 100250416      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (134 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (125 genes)  IEA  
GO MF
Protein XP_002280535.1 [sequence] [blastp]
XP_010652312.1 [sequence] [blastp]
XP_010652313.1 [sequence] [blastp]
XP_010652314.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_002280535.1)
nucl 5,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_010652312.1)
nucl 5,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_010652313.1)
nucl 5,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_010652314.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002280535.1)
other 8  (predict for XP_010652312.1)
other 8  (predict for XP_010652313.1)
other 8  (predict for XP_010652314.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100250416
vvi-r.5
for
100250416
vvi-m.5
for
100250416
ath-u.5
for
AT1G02330
gma-u.5
for
100812323
gma-u.5
for
100798791
bra-r.6
for
103844598
ppo-u.5
for
7486829
mtr-u.5
for
25484718
ghi-r.1
for
107912287
ghi-r.1
for
121209747
bna-r.1
for
BNAC05G01090D
bna-r.1
for
BNAA10G00980D
cit-r.1
for
102617043
sly-u.5
for
101252715
sot-r.1
for
102603035
nta-r.1
for
107778924
nta-r.1
for
107810621
osa-u.5
for
4332947
zma-u.5
for
100282469
tae-r.2
for
123146274
tae-r.2
for
123146272
tae-r.2
for
123140008
hvu-r.1
for
123403053
sbi-r.1
for
8082281
bdi-r.1
for
100821850
cre-r.1
for
CHLRE_10g423350v5


Ortholog ID: 8713
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100250416 AT1G02330 LOC100812323 LOC100798791 LOC103844598 LOC7486829 LOC25484718 LOC107912287 LOC121209747 BNAC05G01090D BNAA10G00980D LOC102617043 LOC101252715 LOC102603035 LOC107778924 LOC107810621 LOC4332947 LOC100282469 LOC123146272 LOC123129108 LOC123129107 LOC123403053 LOC8082281 LOC100821850 CHLRE_10g423350v5
Function* protein COP1 SUPPRESSOR 2 integrator complex subunit-like protein uncharacterized LOC100812323 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 hypothetical protein COP1 SUPPRESSOR 2-like protein uncharacterized protein C9orf78 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 uncharacterized LOC100282469 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 protein COP1 SUPPRESSOR 2 uncharacterized protein C9orf78 homolog protein COP1 SUPPRESSOR 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma01240 Biosynthesis of cofactors 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
hvu00190 Oxidative phosphorylation 2
hvu04142 Lysosome 2
hvu04145 Phagosome 2
hvu01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100250416 839367 100812323 100798791 103844598 7486829 25484718 107912287 121209747 106401982 106370923 102617043 101252715 102603035 107778924 107810621 4332947 100282469 123146272 123129108 123129107 123403053 8082281 100821850 5728230
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