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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100250427   small nuclear ribonucleoprotein SmD3b 
 vvi-r.5   100250427   small nuclear ribonucleoprotein SmD3b 
 vvi-m.5   100250427   small nuclear ribonucleoprotein SmD3b 
 vvi-u.5   109124003   small nuclear ribonucleoprotein SmD3b 
 vvi-u.5   100254787   small nuclear ribonucleoprotein SmD3b 
 ath-u.5   AT1G20580   Small nuclear ribonucleoprotein family protein 
 ath-u.5   SmD3   snRNP core protein SMD3 
 gma-u.5   100790315   small nuclear ribonucleoprotein SmD3b 
 gma-u.5   100305856   uncharacterized LOC100305856 
 bra-r.6   103832082   small nuclear ribonucleoprotein SmD3b 
 bra-r.6   103872847   small nuclear ribonucleoprotein SmD3b 
 ppo-u.5   7494696   small nuclear ribonucleoprotein SmD3b 
 ppo-u.5   7474576   small nuclear ribonucleoprotein SmD3b 
 mtr-u.5   11426884   small nuclear ribonucleoprotein SmD3b 
 ghi-r.1   121207993   small nuclear ribonucleoprotein SmD3b 
 ghi-r.1   107962870   small nuclear ribonucleoprotein SmD3b 
 ghi-r.1   107922261   small nuclear ribonucleoprotein SmD3b 
 bna-r.1   106421685   small nuclear ribonucleoprotein SmD3b 
 bna-r.1   111198593   small nuclear ribonucleoprotein SmD3b-like 
 bna-r.1   106406519   small nuclear ribonucleoprotein SmD3b 
 cit-r.1   102614429   small nuclear ribonucleoprotein SmD3b 
 sly-u.5   101256541   small nuclear ribonucleoprotein SmD3b 
 sly-u.5   101250657   small nuclear ribonucleoprotein SmD3b 
 sly-u.5   101247792   small nuclear ribonucleoprotein SmD3b 
 sot-r.1   102578763   small nuclear ribonucleoprotein SmD3b-like 
 sot-r.1   102590383   small nuclear ribonucleoprotein SmD3b-like 
 sot-r.1   102585876   small nuclear ribonucleoprotein SmD3b-like 
 nta-r.1   107777296   small nuclear ribonucleoprotein SmD3b 
 nta-r.1   107832377   small nuclear ribonucleoprotein SmD3b-like 
 nta-r.1   107795829   small nuclear ribonucleoprotein SmD3b-like 
 osa-u.5   4327991   small nuclear ribonucleoprotein SmD3b 
 osa-u.5   4332206   small nuclear ribonucleoprotein SmD3b 
 zma-u.5   103633373   small nuclear ribonucleoprotein Sm D3-like 
 zma-u.5   100285722   uncharacterized LOC100285722 
 zma-u.5   100284316   uncharacterized LOC100284316 
 tae-r.2   123106193   small nuclear ribonucleoprotein SmD3b 
 tae-r.2   123099240   small nuclear ribonucleoprotein SmD3b 
 tae-r.2   123094041   small nuclear ribonucleoprotein SmD3b 
 hvu-r.1   123450034   small nuclear ribonucleoprotein SmD3b-like 
 sbi-r.1   8078866   small nuclear ribonucleoprotein SmD3b 
 sbi-r.1   110434419   small nuclear ribonucleoprotein SmD3b-like 
 bdi-r.1   100821324   small nuclear ribonucleoprotein SmD3b 
 cre-r.1   CHLRE_10g455300v5   uncharacterized protein 

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Top 50 coexpressed genes to 100250427 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100250427 (vvi-u.5 coexpression data)

CoexMap"100250427"


vviLOC100250427 | Entrez gene ID : 100250427      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 2 2 2 2 1 3 3 1 3 3 3 2 3 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03040 [list] [network] Spliceosome (236 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (22 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (548 genes)  IEA  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (6 genes)  IEA  
GO:0005687 [list] [network] U4 snRNP  (9 genes)  IEA  
GO:0034719 [list] [network] SMN-Sm protein complex  (9 genes)  IEA  
GO:0000243 [list] [network] commitment complex  (10 genes)  IEA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IEA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (19 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (20 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (20 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (29 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (29 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (51 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
Protein XP_002282385.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for XP_002282385.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002282385.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100250427
vvi-r.5
for
100250427
vvi-m.5
for
100250427
vvi-u.5
for
109124003
vvi-u.5
for
100254787
ath-u.5
for
AT1G20580
ath-u.5
for
SmD3
gma-u.5
for
100790315
gma-u.5
for
100305856
bra-r.6
for
103832082
bra-r.6
for
103872847
ppo-u.5
for
7494696
ppo-u.5
for
7474576
mtr-u.5
for
11426884
ghi-r.1
for
121207993
ghi-r.1
for
107962870
ghi-r.1
for
107922261
bna-r.1
for
106421685
bna-r.1
for
111198593
bna-r.1
for
106406519
cit-r.1
for
102614429
sly-u.5
for
101256541
sly-u.5
for
101250657
sly-u.5
for
101247792
sot-r.1
for
102578763
sot-r.1
for
102590383
sot-r.1
for
102585876
nta-r.1
for
107777296
nta-r.1
for
107832377
nta-r.1
for
107795829
osa-u.5
for
4327991
osa-u.5
for
4332206
zma-u.5
for
103633373
zma-u.5
for
100285722
zma-u.5
for
100284316
tae-r.2
for
123106193
tae-r.2
for
123099240
tae-r.2
for
123094041
hvu-r.1
for
123450034
sbi-r.1
for
8078866
sbi-r.1
for
110434419
bdi-r.1
for
100821324
cre-r.1
for
CHLRE_10g455300v5


Ortholog ID: 3747
Species vvi vvi vvi ath ath gma gma bra bra ppo ppo mtr ghi ghi ghi bna bna bna cit sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC100250427 LOC109124003 LOC100254787 AT1G20580 SmD3 LOC100790315 LOC100305856 LOC103832082 LOC103872847 LOC7494696 LOC7474576 LOC11426884 LOC107922261 LOC107910684 LOC121213876 LOC111198593 LOC106406519 LOC106347267 LOC102614429 LOC101256541 LOC101250657 LOC101247792 LOC102578763 LOC102590383 LOC102585876 LOC107777296 LOC107832377 LOC107782247 LOC4327991 LOC4332206 LOC103633373 LOC100285722 LOC100284316 LOC123106193 LOC123099240 LOC123094041 LOC123450034 LOC8078866 LOC110434419 LOC100821324 CHLRE_10g455300v5
Function* small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b Small nuclear ribonucleoprotein family protein snRNP core protein SMD3 small nuclear ribonucleoprotein SmD3b uncharacterized LOC100305856 small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein Sm D3-like uncharacterized LOC100285722 uncharacterized LOC100284316 small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b small nuclear ribonucleoprotein SmD3b-like small nuclear ribonucleoprotein SmD3b uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi00230 Purine metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03018 RNA degradation 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma04120 Ubiquitin mediated proteolysis 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00650 Butanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03010 Ribosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 4
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
sly03008 Ribosome biogenesis in eukaryotes 3
sly03030 DNA replication 2
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03018 RNA degradation 5
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03018 RNA degradation 3
zma03060 Protein export 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03040 Spliceosome 5
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
cre03018 RNA degradation 2
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100250427 109124003 100254787 838647 843963 100790315 100305856 103832082 103872847 7494696 7474576 11426884 107922261 107910684 121213876 111198593 106406519 106347267 102614429 101256541 101250657 101247792 102578763 102590383 102585876 107777296 107832377 107782247 4327991 4332206 103633373 100285722 100284316 123106193 123099240 123094041 123450034 8078866 110434419 100821324 5724099
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