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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100252557   putative pentatricopeptide repeat-containing protein At3g28640 
 vvi-r.5   100252557   putative pentatricopeptide repeat-containing protein At3g28640 
 ath-u.5   AT3G28640   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G28660   Tetratricopeptide repeat (TPR)-like superfamily protein 
 sly-u.5   112940028   putative pentatricopeptide repeat-containing protein At3g28640 
 zma-u.5   100382022   Putative pentatricopeptide repeat-containing protein 

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Top 50 coexpressed genes to 100252557 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100252557 (vvi-u.5 coexpression data)

CoexMap"100252557"


vviLOC100252557 | Entrez gene ID : 100252557      
Species vvi ath sly zma ppo hvu mtr osa sot tae nta bra cit gma ghi bna bdi sbi cre
Paralog 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002276684.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 4,  cyto_mito 3  (predict for XP_002276684.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_002276684.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100252557

.
vvi-r.5
for
100252557

.
ath-u.5
for
AT3G28640

.
ath-u.5
for
AT3G28660

.
sly-u.5
for
112940028

.
zma-u.5
for
100382022

.


Ortholog ID: 12436
Species ath ath sly zma bra vvi hvu ghi bna bna sbi sot bdi nta nta
Symbol AT3G28640 AT3G28660 LOC112940028 LOC100382022 LOC103875142 LOC100252557 LOC123447694 LOC107892350 LOC106349166 LOC125574829 LOC8068681 LOC102596588 LOC100838036 LOC107816246 LOC107826377
Function* Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At3g28640 Putative pentatricopeptide repeat-containing protein putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra01240 Biosynthesis of cofactors 4
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03440 Homologous recombination 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822494 822496 112940028 100382022 103875142 100252557 123447694 107892350 106349166 125574829 8068681 102596588 100838036 107816246 107826377
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