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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103875142   putative pentatricopeptide repeat-containing protein At3g28640 
 bna-r.1   125574829   putative pentatricopeptide repeat-containing protein At3g28640 
 bna-r.1   106349166   putative pentatricopeptide repeat-containing protein At3g28640 
 ath-u.5   AT3G28640   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT3G28660   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107892350   putative pentatricopeptide repeat-containing protein At3g28640 
 vvi-u.5   100252557   putative pentatricopeptide repeat-containing protein At3g28640 
 sly-u.5   112940028   putative pentatricopeptide repeat-containing protein At3g28640 
 sot-r.1   102596588   putative pentatricopeptide repeat-containing protein At3g28640 
 nta-r.1   107826377   putative pentatricopeptide repeat-containing protein At3g28640 
 nta-r.1   107816246   putative pentatricopeptide repeat-containing protein At3g28640 
 zma-u.5   100382022   Putative pentatricopeptide repeat-containing protein 
 hvu-r.1   123447694   putative pentatricopeptide repeat-containing protein At3g28640 
 sbi-r.1   8068681   putative pentatricopeptide repeat-containing protein At3g28640 
 bdi-r.1   100838036   putative pentatricopeptide repeat-containing protein At3g28640 

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Top 50 coexpressed genes to 103875142 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103875142 (bra-r.6 coexpression data)

CoexMap"103875142"


braLOC103875142 | Entrez gene ID : 103875142    
Species bra bna ath ghi vvi sly sot nta zma hvu sbi bdi osa tae ppo cre mtr gma cit
Paralog 1 2 2 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (422 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009151860.2 [sequence] [blastp]
XP_009151861.2 [sequence] [blastp]
XP_009151862.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_009151860.2)
chlo 9  (predict for XP_009151861.2)
chlo 9  (predict for XP_009151862.2)
Subcellular
localization
TargetP
mito 3  (predict for XP_009151860.2)
mito 3  (predict for XP_009151861.2)
mito 3  (predict for XP_009151862.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103875142
bna-r.1
for
125574829
bna-r.1
for
106349166
ath-u.5
for
AT3G28640
ath-u.5
for
AT3G28660
ghi-r.1
for
107892350
vvi-u.5
for
100252557
sly-u.5
for
112940028
sot-r.1
for
102596588
nta-r.1
for
107826377
nta-r.1
for
107816246
zma-u.5
for
100382022
hvu-r.1
for
123447694
sbi-r.1
for
8068681
bdi-r.1
for
100838036


Ortholog ID: 12436
Species bra bna bna ath ath ghi vvi sly sot nta nta zma hvu sbi bdi
Symbol LOC103875142 LOC125574829 LOC106349166 AT3G28640 AT3G28660 LOC107892350 LOC100252557 LOC112940028 LOC102596588 LOC107826377 LOC107816246 LOC100382022 LOC123447694 LOC8068681 LOC100838036
Function* putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 Putative pentatricopeptide repeat-containing protein putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640 putative pentatricopeptide repeat-containing protein At3g28640
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra01240 Biosynthesis of cofactors 4
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03440 Homologous recombination 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103875142 125574829 106349166 822494 822496 107892350 100252557 112940028 102596588 107826377 107816246 100382022 123447694 8068681 100838036
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