ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100254737	large ribosomal subunit protein uL10
vvi-r.5	100254737	large ribosomal subunit protein uL10
vvi-m.5	100254737	large ribosomal subunit protein uL10
vvi-u.5	100250067	large ribosomal subunit protein uL10
ath-u.5	AT2G40010	Ribosomal protein L10 family protein
ath-u.5	AT3G09200	Ribosomal protein L10 family protein
ath-u.5	AT3G11250	Ribosomal protein L10 family protein
gma-u.5	547816	acidic ribosomal protein P0
gma-u.5	100777482	60S acidic ribosomal protein P0-like
ppo-u.5	112328511	60S acidic ribosomal protein P0
ppo-u.5	7474450	60S acidic ribosomal protein P0
mtr-u.5	11406082	60S acidic ribosomal protein P0
mtr-u.5	25483013	60S acidic ribosomal protein P0
mtr-u.5	11436630	60S acidic ribosomal protein P0
sly-u.5	101258269	large ribosomal subunit protein uL10-like
sly-u.5	101268804	large ribosomal subunit protein uL10-like
sly-u.5	101261521	large ribosomal subunit protein uL10
osa-u.5	9270965	large ribosomal subunit protein uL10-like
osa-u.5	9266027	large ribosomal subunit protein uL10-like
osa-u.5	60SP0	60S acidic ribosomal protein P0-like
zma-u.5	542454	60S acidic ribosomal protein P0
zma-u.5	100273601	60S acidic ribosomal protein P0-2

Annotation

functional annotation

KEGG

vvi03010 [list] [network] Ribosome (544 genes)

GO BP

GO:0000027 [list] [network] ribosomal large subunit assembly	(24 genes)	IEA
GO:0002181 [list] [network] cytoplasmic translation	(66 genes)	IEA
GO:0042254 [list] [network] ribosome biogenesis	(274 genes)	IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit

(115 genes)

IEA

GO MF

GO:0070180 [list] [network] large ribosomal subunit rRNA binding	(10 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(288 genes)	IEA

Protein

XP_002276842.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, pero 3, cyto_E.R. 3

(predict for XP_002276842.1)

Subcellular
localization
TargetP

other 6, scret 3

(predict for XP_002276842.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100254737	vvi-r.5 for 100254737	vvi-m.5 for 100254737	vvi-u.5 for 100250067	ath-u.5 for AT2G40010	ath-u.5 for AT3G09200	ath-u.5 for AT3G11250	gma-u.5 for 547816	gma-u.5 for 100777482	ppo-u.5 for 112328511	ppo-u.5 for 7474450	mtr-u.5 for 11406082	mtr-u.5 for 25483013	mtr-u.5 for 11436630	sly-u.5 for 101258269	sly-u.5 for 101268804	sly-u.5 for 101261521	osa-u.5 for 9270965	osa-u.5 for 9266027	osa-u.5 for 60SP0	zma-u.5 for 542454	zma-u.5 for 100273601

Ortholog

Ortholog ID: 2458

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

60SP0

Function^*

large ribosomal subunit protein uL10

Ribosomal protein L10 family protein

60S acidic ribosomal protein P0-like

60S acidic ribosomal protein P0-2

60S acidic ribosomal protein P0

60S acidic ribosomal protein P0-2

60S acidic ribosomal protein P0

large ribosomal subunit protein uL10-like

60S acidic ribosomal protein P0-like

large ribosomal subunit protein uL10

large ribosomal subunit protein uL10z-like

60S acidic ribosomal protein P0-like

large ribosomal subunit protein uL10-like

60S acidic ribosomal protein P0-2

60S acidic ribosomal protein P0

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	13
vvi00230	Purine metabolism	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	17
ath03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14
gma03015	mRNA surveillance pathway	3
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	10
ppo03015	mRNA surveillance pathway	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00290	Valine, leucine and isoleucine biosynthesis	2
ghi00770	Pantothenate and CoA biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi00290	Valine, leucine and isoleucine biosynthesis	2
ghi00770	Pantothenate and CoA biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	17
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03440	Homologous recombination	2
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03013	Nucleocytoplasmic transport	3
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	19
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	16
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7
bdi04120	Ubiquitin mediated proteolysis	5
bdi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	16
cre00220	Arginine biosynthesis	2
cre00250	Alanine, aspartate and glutamate metabolism	2
cre00630	Glyoxylate and dicarboxylate metabolism	2
cre00910	Nitrogen metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100254737

100250067

820296

820076

100777482

103848258

103870557

7474450

112328511

11406082

25483013

107934983

107960342

106439210

106427969

102614468

101258269

101268804

102578519

107772468

107801773

4344590

9266027

100273601

542454

123169837

123412650

8074077

8063582

104583534

100835745

5722589

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100254737 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100254737 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	2	2	3	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100254737 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100254737 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**