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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100258658   la-related protein 1A 
 vvi-r.5   100258658   la-related protein 1A 
 vvi-m.5   100258658   la-related protein 1A 
 vvi-u.5   100254731   la-related protein 1A 
 ath-u.5   LARP1a   LA RNA-binding protein 
 gma-u.5   100813202   la-related protein 1A 
 gma-u.5   100780505   la-related protein 1A 
 ppo-u.5   7489321   la-related protein 1A 
 ppo-u.5   7467966   la-related protein 1A 
 mtr-u.5   11435207   la-related protein 1A 
 sly-u.5   101245852   la-related protein 1A 
 osa-u.5   4324370   la-related protein 1A 
 zma-u.5   100193028   uncharacterized LOC100193028 

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Top 50 coexpressed genes to 100258658 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100258658 (vvi-u.5 coexpression data)

CoexMap"100258658"


vviLOC100258658 | Entrez gene ID : 100258658      
Species vvi ath gma ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 4 1 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048255 [list] [network] mRNA stabilization  (2 genes)  IEA  
GO CC
GO MF
GO:0000339 [list] [network] RNA cap binding  (11 genes)  IEA  
Protein XP_002266709.1 [sequence] [blastp]
XP_010653137.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_002266709.1)
nucl 9  (predict for XP_010653137.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002266709.1)
other 9  (predict for XP_010653137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100258658

.
vvi-r.5
for
100258658

.
vvi-m.5
for
100258658

.
vvi-u.5
for
100254731

.
ath-u.5
for
LARP1a

.
gma-u.5
for
100813202

.
gma-u.5
for
100780505

.
ppo-u.5
for
7489321

.
ppo-u.5
for
7467966

.
mtr-u.5
for
11435207

.
sly-u.5
for
101245852

.
osa-u.5
for
4324370

.
zma-u.5
for
100193028

.


Ortholog ID: 7346
Species ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol LARP1a LOC100813202 LOC100780505 LOC101245852 LOC4324370 LOC100193028 LOC103851404 LOC103845604 LOC100254731 LOC100258658 LOC7489321 LOC7467966 LOC11435207 LOC123061045 LOC123069636 LOC123443470 LOC107959044 LOC107906204 LOC106371688 LOC106421359 CHLRE_10g441200v5 LOC8074507 LOC102590409 LOC102621746 LOC100821192 LOC107784198 LOC107770309
Function* LA RNA-binding protein la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A uncharacterized LOC100193028 la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A uncharacterized protein la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A la-related protein 1A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00785 Lipoic acid metabolism 2
gma01200 Carbon metabolism 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03013 Nucleocytoplasmic transport 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna00450 Selenocompound metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna00450 Selenocompound metabolism 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832242 100813202 100780505 101245852 4324370 100193028 103851404 103845604 100254731 100258658 7489321 7467966 11435207 123061045 123069636 123443470 107959044 107906204 106371688 106421359 5716139 8074507 102590409 102621746 100821192 107784198 107770309
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