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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100259509   mediator of RNA polymerase II transcription subunit 25 
 vvi-r.5   100259509   mediator of RNA polymerase II transcription subunit 25 
 ath-u.5   PFT1   phytochrome and flowering time regulatory protein (PFT1) 
 gma-u.5   100801664   mediator of RNA polymerase II transcription subunit 25 
 gma-u.5   100786254   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7466913   mediator of RNA polymerase II transcription subunit 25 
 ppo-u.5   7483938   mediator of RNA polymerase II transcription subunit 25-like 
 mtr-u.5   25494748   mediator of RNA polymerase II transcription subunit 25 
 mtr-u.5   25481943   mediator of RNA polymerase II transcription subunit 25 
 sly-u.5   101258928   mediator of RNA polymerase II transcription subunit 25 
 osa-u.5   4346673   mediator of RNA polymerase II transcription subunit 25 
 zma-u.5   103647359   mediator of RNA polymerase II transcription subunit 25 

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Top 50 coexpressed genes to 100259509 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100259509 (vvi-u.5 coexpression data)

CoexMap"100259509"


vviLOC100259509 | Entrez gene ID : 100259509      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 2 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (126 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (33 genes)  IEA  
GO:0005667 [list] [network] transcription regulator complex  (120 genes)  IEA  
GO MF
GO:0003676 [list] [network] nucleic acid binding  (3261 genes)  IEA  
Protein XP_002278845.1 [sequence] [blastp]
XP_059593958.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto 1,  extr 1  (predict for XP_002278845.1)
nucl 5,  chlo 4  (predict for XP_059593958.1)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for XP_002278845.1)
other 5,  scret 3  (predict for XP_059593958.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100259509
vvi-r.5
for
100259509
ath-u.5
for
PFT1
gma-u.5
for
100801664
gma-u.5
for
100786254
ppo-u.5
for
7466913
ppo-u.5
for
7483938
mtr-u.5
for
25494748
mtr-u.5
for
25481943
sly-u.5
for
101258928
osa-u.5
for
4346673
zma-u.5
for
103647359


Ortholog ID: 5894
Species vvi ath gma gma bra bra ppo ppo mtr mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC100259509 PFT1 LOC100786254 LOC100801664 LOC103835463 LOC103840588 LOC7483938 LOC7466913 LOC25481943 LOC11433176 LOC107919383 LOC107887167 LOC106361861 LOC106361923 LOC102624904 LOC101258928 LOC102582320 LOC107795738 LOC107826460 LOC4346673 LOC103647359 LOC123121169 LOC100682446 LOC123452291 LOC110432905 LOC100843505 CHLRE_17g736950v5
Function* mediator of RNA polymerase II transcription subunit 25 phytochrome and flowering time regulatory protein (PFT1) mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25-like mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 mediator of RNA polymerase II transcription subunit 25 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03022 Basal transcription factors 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot03083 Polycomb repressive complex 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00053 Ascorbate and aldarate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00620 Pyruvate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100259509 839141 100786254 100801664 103835463 103840588 7483938 7466913 25481943 11433176 107919383 107887167 106361861 106361923 102624904 101258928 102582320 107795738 107826460 4346673 103647359 123121169 100682446 123452291 110432905 100843505 66057138
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