ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	110432905	mediator of RNA polymerase II transcription subunit 25
zma-u.5	103647359	mediator of RNA polymerase II transcription subunit 25
osa-u.5	4346673	mediator of RNA polymerase II transcription subunit 25
ath-u.5	PFT1	phytochrome and flowering time regulatory protein (PFT1)
gma-u.5	100801664	mediator of RNA polymerase II transcription subunit 25
gma-u.5	100786254	mediator of RNA polymerase II transcription subunit 25
sly-u.5	101258928	mediator of RNA polymerase II transcription subunit 25
vvi-u.5	100259509	mediator of RNA polymerase II transcription subunit 25
ppo-u.5	7466913	mediator of RNA polymerase II transcription subunit 25
ppo-u.5	7483938	mediator of RNA polymerase II transcription subunit 25-like
mtr-u.5	25481943	mediator of RNA polymerase II transcription subunit 25
mtr-u.5	11433176	mediator of RNA polymerase II transcription subunit 25

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(109 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex	(37 genes)	IEA
GO:0005667 [list] [network] transcription regulator complex	(117 genes)	IEA

GO MF

Protein

XP_021309762.1 [sequence] [blastp]
XP_021309763.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_021309762.1)
nucl 10	(predict for XP_021309763.1)

Subcellular
localization
TargetP

other 6, scret 3	(predict for XP_021309762.1)
other 6, scret 3	(predict for XP_021309763.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 110432905	zma-u.5 for 103647359	osa-u.5 for 4346673	ath-u.5 for PFT1	gma-u.5 for 100801664	gma-u.5 for 100786254	sly-u.5 for 101258928	vvi-u.5 for 100259509	ppo-u.5 for 7466913	ppo-u.5 for 7483938	mtr-u.5 for 25481943	mtr-u.5 for 11433176

Ortholog

Ortholog ID: 5894

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PFT1

Function^*

mediator of RNA polymerase II transcription subunit 25

phytochrome and flowering time regulatory protein (PFT1)

mediator of RNA polymerase II transcription subunit 25

mediator of RNA polymerase II transcription subunit 25-like

mediator of RNA polymerase II transcription subunit 25

mediator of RNA polymerase II transcription subunit 25-like

mediator of RNA polymerase II transcription subunit 25

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03022	Basal transcription factors	2
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03083	Polycomb repressive complex	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta00053	Ascorbate and aldarate metabolism	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00620	Pyruvate metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5

Expression

Expression pattern

Entrez Gene ID^*

110432905

103647359

4346673

123121169

100682446

123452291

100843505

839141

100786254

100801664

101258928

103835463

103840588

100259509

7483938

7466913

25481943

11433176

107919383

107887167

106361861

106361923

102582320

102624904

107795738

107826460

66057138

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 110432905 (sbi-r.1 coexpression data)

Top 50 enrichment test to 110432905 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	bdi	nta	tae	cre	sot
Paralog	1	1	1	1	2	1	1	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 110432905 (sbi-r.1 coexpression data)

Top 50 enrichment test to 110432905 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**