ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100260395	uncharacterized LOC100260395
vvi-r.5	100260395	uncharacterized LOC100260395
vvi-m.5	100260395	uncharacterized LOC100260395
vvi-u.5	100250131	uncharacterized LOC100250131
ath-u.5	AT5G01960	RING/U-box superfamily protein
gma-u.5	100818546	RING finger and transmembrane domain-containing protein 2
gma-u.5	100816630	E3 ubiquitin-protein ligase RNFT1
gma-u.5	100784614	E3 ubiquitin-protein ligase RNFT1
bra-r.6	103855890	RING finger and transmembrane domain-containing protein 2
ppo-u.5	7465193	uncharacterized LOC7465193
ppo-u.5	7472494	uncharacterized LOC7472494
ppo-u.5	18100026	uncharacterized LOC18100026
mtr-u.5	25489803	E3 ubiquitin-protein ligase RNFT1
mtr-u.5	11433632	RING finger and transmembrane domain-containing protein 2
ghi-r.1	107935976	RING finger and transmembrane domain-containing protein 2
ghi-r.1	107903957	RING finger and transmembrane domain-containing protein 2
bna-r.1	106384878	RING finger and transmembrane domain-containing protein 2-like
bna-r.1	106430137	RING finger and transmembrane domain-containing protein 2
cit-r.1	102625756	uncharacterized LOC102625756
cit-r.1	102618818	uncharacterized LOC102618818
sly-u.5	101246930	uncharacterized LOC101246930
sly-u.5	101258505	uncharacterized LOC101258505
sly-u.5	101251454	uncharacterized LOC101251454
sot-r.1	102584770	RING finger and transmembrane domain-containing protein 1-like
sot-r.1	102588827	RING finger and transmembrane domain-containing protein 1-like
sot-r.1	102589407	RING finger and transmembrane domain-containing protein 2
nta-r.1	107773244	uncharacterized LOC107773244
nta-r.1	107764140	uncharacterized LOC107764140
nta-r.1	107827050	uncharacterized LOC107827050
osa-u.5	4338390	uncharacterized LOC4338390
osa-u.5	4325191	uncharacterized LOC4325191
zma-u.5	100283090	zinc finger, C3HC4 type family protein
zma-u.5	103655972	uncharacterized LOC103655972
zma-u.5	100384847	uncharacterized LOC100384847
tae-r.2	123180644	RING finger and transmembrane domain-containing protein 2
tae-r.2	123114228	RING finger and transmembrane domain-containing protein 2
tae-r.2	123039942	RING finger and transmembrane domain-containing protein 2
hvu-r.1	123426538	RING finger and transmembrane domain-containing protein 2-like
hvu-r.1	123428732	RING finger and transmembrane domain-containing protein 2-like
hvu-r.1	123442818	RING finger and transmembrane domain-containing protein 2-like
sbi-r.1	110433288	RING finger and transmembrane domain-containing protein 2-like
sbi-r.1	8058329	RING finger and transmembrane domain-containing protein 2
bdi-r.1	100831035	RING finger and transmembrane domain-containing protein 2
bdi-r.1	100834597	60S ribosomal protein L10-2
bdi-r.1	100835623	RING finger and transmembrane domain-containing protein 2
cre-r.1	CHLRE_16g669350v5	uncharacterized protein
cre-r.1	CHLRE_16g668451v5	uncharacterized protein

Top 50 coexpressed genes to 100260395 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100260395 (vvi-u.5 coexpression data)

CoexMap"100260395"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:1904294 [list] [network] positive regulation of ERAD pathway

(3 genes)

IEA

GO CC

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity

(166 genes)

IEA

Protein

XP_002275951.1 [sequence] [blastp]
XP_019076143.1 [sequence] [blastp]
XP_019076144.1 [sequence] [blastp]
XP_059593525.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, cyto 1, extr 1, vacu 1, cyto_nucl 1	(predict for XP_002275951.1)
chlo 7, nucl 1, cyto 1, extr 1, vacu 1, cyto_nucl 1	(predict for XP_019076143.1)
chlo 7, nucl 1, cyto 1, extr 1, vacu 1, cyto_nucl 1	(predict for XP_019076144.1)
chlo 7, nucl 1, cyto 1, extr 1, vacu 1, cyto_nucl 1	(predict for XP_059593525.1)

Subcellular
localization
TargetP

scret 4	(predict for XP_002275951.1)
scret 4	(predict for XP_019076143.1)
scret 4	(predict for XP_019076144.1)
scret 4	(predict for XP_059593525.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100260395	vvi-r.5 for 100260395	vvi-m.5 for 100260395	vvi-u.5 for 100250131	ath-u.5 for AT5G01960	gma-u.5 for 100818546	gma-u.5 for 100816630	gma-u.5 for 100784614	bra-r.6 for 103855890	ppo-u.5 for 7465193	ppo-u.5 for 7472494	ppo-u.5 for 18100026	mtr-u.5 for 25489803	mtr-u.5 for 11433632	ghi-r.1 for 107935976	ghi-r.1 for 107903957	bna-r.1 for 106384878	bna-r.1 for 106430137	cit-r.1 for 102625756	cit-r.1 for 102618818	sly-u.5 for 101246930	sly-u.5 for 101258505	sly-u.5 for 101251454	sot-r.1 for 102584770	sot-r.1 for 102588827	sot-r.1 for 102589407	nta-r.1 for 107773244	nta-r.1 for 107764140	nta-r.1 for 107827050	osa-u.5 for 4338390	osa-u.5 for 4325191	zma-u.5 for 100283090	zma-u.5 for 103655972	zma-u.5 for 100384847	tae-r.2 for 123180644	tae-r.2 for 123114228	tae-r.2 for 123039942	hvu-r.1 for 123426538	hvu-r.1 for 123428732	hvu-r.1 for 123442818	sbi-r.1 for 110433288	sbi-r.1 for 8058329	bdi-r.1 for 100831035	bdi-r.1 for 100834597	bdi-r.1 for 100835623	cre-r.1 for CHLRE_16g669350v5	cre-r.1 for CHLRE_16g668451v5

Ortholog

Ortholog ID: 2937

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100260395

uncharacterized LOC100250131

RING/U-box superfamily protein

RING finger and transmembrane domain-containing protein 2

E3 ubiquitin-protein ligase RNFT1

RING finger and transmembrane domain-containing protein 2

uncharacterized LOC7465193

uncharacterized LOC7472494

uncharacterized LOC18100026

E3 ubiquitin-protein ligase RNFT1

RING finger and transmembrane domain-containing protein 2

RING finger and transmembrane domain-containing protein 2-like

RING finger and transmembrane domain-containing protein 2

uncharacterized LOC102625756

uncharacterized LOC102618818

uncharacterized LOC101246930

uncharacterized LOC101258505

uncharacterized LOC101251454

RING finger and transmembrane domain-containing protein 1-like

RING finger and transmembrane domain-containing protein 2

uncharacterized LOC107773244

uncharacterized LOC107827050

uncharacterized LOC107783021

uncharacterized LOC4338390

uncharacterized LOC4325191

uncharacterized LOC103655972

uncharacterized LOC100384847

uncharacterized LOC100283780

RING finger and transmembrane domain-containing protein 2

RING finger and transmembrane domain-containing protein 2-like

RING finger and transmembrane domain-containing protein 2

60S ribosomal protein L10-2

RING finger and transmembrane domain-containing protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2
sot00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	3
nta00640	Propanoate metabolism	3
nta00785	Lipoic acid metabolism	3
nta01210	2-Oxocarboxylic acid metabolism	3
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	3
nta00640	Propanoate metabolism	3
nta00785	Lipoic acid metabolism	3
nta01210	2-Oxocarboxylic acid metabolism	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	6
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4
sbi00730	Thiamine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	16
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	3

Expression

Expression pattern

Entrez Gene ID^*

100260395

100250131

831906

100818546

100816630

100784614

103855890

7465193

7472494

18100026

25489803

11433632

107935976

107903957

106384878

106430137

102625756

102618818

101246930

101258505

101251454

102584770

102588827

102589407

107773244

107827050

107783021

4338390

4325191

103655972

100384847

100283780

123180644

123060284

123180851

123426538

123428732

123442818

110433288

8058329

100831035

100834597

100835623

5724722

66056614

The preparation time of this page was 0.5 [sec].


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	1	3	2	2	2	2	3	3	3	2	3	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100260395 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100260395 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**