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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100816630   E3 ubiquitin-protein ligase RNFT1 
 gma-r.7   100816630   E3 ubiquitin-protein ligase RNFT1 
 gma-u.5   100784614   E3 ubiquitin-protein ligase RNFT1 
 gma-u.5   100818546   RING finger and transmembrane domain-containing protein 2 
 mtr-u.5   11433632   RING finger and transmembrane domain-containing protein 2 
 mtr-u.5   25489803   E3 ubiquitin-protein ligase RNFT1 
 ppo-u.5   7472494   uncharacterized LOC7472494 
 ppo-u.5   7465193   uncharacterized LOC7465193 
 ppo-u.5   18100026   uncharacterized LOC18100026 
 ath-u.5   AT5G01960   RING/U-box superfamily protein 
 vvi-u.5   100260395   uncharacterized LOC100260395 
 vvi-u.5   100250131   uncharacterized LOC100250131 
 sly-u.5   101246930   uncharacterized LOC101246930 
 sly-u.5   101251454   uncharacterized LOC101251454 
 sly-u.5   101258505   uncharacterized LOC101258505 
 osa-u.5   4338390   uncharacterized LOC4338390 
 osa-u.5   4325191   uncharacterized LOC4325191 
 zma-u.5   103655972   uncharacterized LOC103655972 
 zma-u.5   100384847   uncharacterized LOC100384847 
 zma-u.5   100283780   uncharacterized LOC100283780 

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Top 50 coexpressed genes to 100816630 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100816630 (gma-u.5 coexpression data)

CoexMap"100816630"


gmaLOC100816630 | Entrez gene ID : 100816630      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 3 1 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1904294 [list] [network] positive regulation of ERAD pathway  (5 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
Protein XP_003523294.1 [sequence] [blastp]
XP_040870952.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  pero 2,  cysk_nucl 2,  cyto_pero 2  (predict for XP_003523294.1)
nucl 4,  cyto 3,  pero 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_040870952.1)
Subcellular
localization
TargetP
other 7,  chlo 6  (predict for XP_003523294.1)
other 7,  chlo 6  (predict for XP_040870952.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100816630

.
gma-r.7
for
100816630

.
gma-u.5
for
100784614

.
gma-u.5
for
100818546

.
mtr-u.5
for
11433632

.
mtr-u.5
for
25489803

.
ppo-u.5
for
7472494

.
ppo-u.5
for
7465193

.
ppo-u.5
for
18100026

.
ath-u.5
for
AT5G01960

.
vvi-u.5
for
100260395

.
vvi-u.5
for
100250131

.
sly-u.5
for
101246930

.
sly-u.5
for
101251454

.
sly-u.5
for
101258505

.
osa-u.5
for
4338390

.
osa-u.5
for
4325191

.
zma-u.5
for
103655972

.
zma-u.5
for
100384847

.
zma-u.5
for
100283780

.


Ortholog ID: 2937
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G01960 LOC100818546 LOC100784614 LOC101258505 LOC101251454 LOC4325191 LOC4338390 LOC103655972 LOC100384847 LOC103855890 LOC100250131 LOC100260395 LOC18100026 LOC7472494 LOC25489803 LOC11433632 LOC123180851 LOC123060284 LOC123428732 LOC123442818 LOC107903957 LOC107935976 LOC106430137 LOC106384878 CHLRE_16g669350v5 CHLRE_16g668451v5 LOC110433288 LOC8058329 LOC102588827 LOC102584770 LOC102618818 LOC102625756 LOC100834597 LOC100835623 LOC107773244 LOC107827050
Function* RING/U-box superfamily protein RING finger and transmembrane domain-containing protein 2 E3 ubiquitin-protein ligase RNFT1 uncharacterized LOC101258505 uncharacterized LOC101251454 uncharacterized LOC4325191 uncharacterized LOC4338390 uncharacterized LOC103655972 uncharacterized LOC100384847 RING finger and transmembrane domain-containing protein 2 uncharacterized LOC100250131 uncharacterized LOC100260395 uncharacterized LOC18100026 uncharacterized LOC7472494 E3 ubiquitin-protein ligase RNFT1 RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2-like RING finger and transmembrane domain-containing protein 2-like RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 2-like uncharacterized protein uncharacterized protein RING finger and transmembrane domain-containing protein 2-like RING finger and transmembrane domain-containing protein 2 RING finger and transmembrane domain-containing protein 1-like RING finger and transmembrane domain-containing protein 1-like uncharacterized LOC102618818 uncharacterized LOC102625756 60S ribosomal protein L10-2 RING finger and transmembrane domain-containing protein 2 uncharacterized LOC107773244 uncharacterized LOC107827050
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot04626 Plant-pathogen interaction 2
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 16
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 3
nta00640 Propanoate metabolism 3
nta00785 Lipoic acid metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 3
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 3
nta00640 Propanoate metabolism 3
nta00785 Lipoic acid metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 3
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831906 100818546 100784614 101258505 101251454 4325191 4338390 103655972 100384847 103855890 100250131 100260395 18100026 7472494 25489803 11433632 123180851 123060284 123428732 123442818 107903957 107935976 106430137 106384878 5724722 66056614 110433288 8058329 102588827 102584770 102618818 102625756 100834597 100835623 107773244 107827050
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