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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100262056   uncharacterized LOC100262056 
 vvi-r.5   100262056   uncharacterized LOC100262056 
 gma-u.5   100797777   probable ATP-dependent DNA helicase RecQ 
 gma-u.5   100804673   probable ATP-dependent DNA helicase RecQ 
 ppo-u.5   7465198   uncharacterized LOC7465198 
 mtr-u.5   25489175   probable ATP-dependent DNA helicase RecQ 
 cit-r.1   102613336   uncharacterized LOC102613336 
 sly-u.5   101263933   uncharacterized LOC101263933 
 sot-r.1   102592601   ATP-dependent DNA helicase RecQ-like 
 nta-r.1   107791025   uncharacterized LOC107791025 
 nta-r.1   107813256   uncharacterized LOC107813256 
 osa-u.5   4344306   uncharacterized LOC4344306 
 zma-u.5   103633568   uncharacterized 103633568 
 tae-r.2   123051539   ATP-dependent DNA helicase RecQ 
 tae-r.2   123043668   ATP-dependent DNA helicase RecQ 
 tae-r.2   123187462   ATP-dependent DNA helicase RecQ 
 hvu-r.1   123424695   ATP-dependent DNA helicase RecQ-like 
 sbi-r.1   8078568   probable ATP-dependent DNA helicase RecQ 
 bdi-r.1   100826629   ATP-dependent DNA helicase RecQ 
 cre-r.1   CHLRE_12g490150v5   uncharacterized protein 

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Top 50 coexpressed genes to 100262056 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100262056 (vvi-u.5 coexpression data)

CoexMap"100262056"


vviLOC100262056 | Entrez gene ID : 100262056      
Species vvi gma ppo mtr cit sly sot nta osa zma tae hvu sbi bdi cre bra bna ghi ath
Paralog 2 2 1 1 1 1 1 2 1 1 3 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03018 [list] [network] RNA degradation (97 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (64 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (115 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (294 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4496 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (9 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (14 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3261 genes)  IEA  
Protein XP_002275696.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  plas 2,  nucl_plas 2  (predict for XP_002275696.3)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_002275696.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100262056
vvi-r.5
for
100262056
gma-u.5
for
100797777
gma-u.5
for
100804673
ppo-u.5
for
7465198
mtr-u.5
for
25489175
cit-r.1
for
102613336
sly-u.5
for
101263933
sot-r.1
for
102592601
nta-r.1
for
107791025
nta-r.1
for
107813256
osa-u.5
for
4344306
zma-u.5
for
103633568
tae-r.2
for
123051539
tae-r.2
for
123043668
tae-r.2
for
123187462
hvu-r.1
for
123424695
sbi-r.1
for
8078568
bdi-r.1
for
100826629
cre-r.1
for
CHLRE_12g490150v5


Ortholog ID: 12517
Species vvi gma gma ppo mtr cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100262056 LOC100797777 LOC100804673 LOC7465198 LOC25489175 LOC102613336 LOC101263933 LOC102592601 LOC107791025 LOC107813256 LOC4344306 LOC103633568 LOC123051539 LOC123043668 LOC123187462 LOC123424695 LOC8078568 LOC100826629 CHLRE_12g490150v5
Function* uncharacterized LOC100262056 probable ATP-dependent DNA helicase RecQ probable ATP-dependent DNA helicase RecQ uncharacterized LOC7465198 probable ATP-dependent DNA helicase RecQ uncharacterized LOC102613336 uncharacterized LOC101263933 ATP-dependent DNA helicase RecQ-like uncharacterized LOC107791025 uncharacterized LOC107813256 uncharacterized LOC4344306 uncharacterized 103633568 ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ-like probable ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 4
ppo03030 DNA replication 4
ppo03460 Fanconi anemia pathway 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 11
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 4
tae03018 RNA degradation 3
tae03420 Nucleotide excision repair 2
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 12
tae03018 RNA degradation 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 9
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100262056 100797777 100804673 7465198 25489175 102613336 101263933 102592601 107791025 107813256 4344306 103633568 123051539 123043668 123187462 123424695 8078568 100826629 5716697
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