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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g490150v5   uncharacterized protein 
 gma-u.5   100797777   probable ATP-dependent DNA helicase RecQ 
 gma-u.5   100804673   probable ATP-dependent DNA helicase RecQ 
 sly-u.5   101263933   uncharacterized LOC101263933 
 osa-u.5   4344306   uncharacterized LOC4344306 
 zma-u.5   103633568   uncharacterized 103633568 
 vvi-u.5   100262056   uncharacterized LOC100262056 
 ppo-u.5   7465198   uncharacterized LOC7465198 
 mtr-u.5   25489175   probable ATP-dependent DNA helicase RecQ 

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Top 50 coexpressed genes to CHLRE_12g490150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g490150v5 (cre-r.1 coexpression data)

CoexMap"5716697"


creCHLRE_12g490150v5 | Entrez gene ID : 5716697    
Species cre gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae ath bna ghi
Paralog 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (334 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042918030.1 [sequence] [blastp]
XP_042918031.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  vacu 4,  nucl 1,  pero 1  (predict for XP_042918030.1)
chlo 5,  vacu 4,  nucl 1,  pero 1  (predict for XP_042918031.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_042918030.1)
mito 6  (predict for XP_042918031.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g490150v5

.
gma-u.5
for
100797777

.
gma-u.5
for
100804673

.
sly-u.5
for
101263933

.
osa-u.5
for
4344306

.
zma-u.5
for
103633568

.
vvi-u.5
for
100262056

.
ppo-u.5
for
7465198

.
mtr-u.5
for
25489175

.


Ortholog ID: 12517
Species gma gma sly osa zma vvi ppo mtr tae tae hvu cre sbi sot cit bdi nta nta
Symbol LOC100804673 LOC100797777 LOC101263933 LOC4344306 LOC103633568 LOC100262056 LOC7465198 LOC25489175 LOC123187462 LOC123051539 LOC123424695 CHLRE_12g490150v5 LOC8078568 LOC102592601 LOC102613336 LOC100826629 LOC107813256 LOC107791025
Function* probable ATP-dependent DNA helicase RecQ probable ATP-dependent DNA helicase RecQ uncharacterized LOC101263933 uncharacterized LOC4344306 uncharacterized 103633568 uncharacterized LOC100262056 uncharacterized LOC7465198 probable ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ-like uncharacterized protein probable ATP-dependent DNA helicase RecQ ATP-dependent DNA helicase RecQ-like uncharacterized LOC102613336 ATP-dependent DNA helicase RecQ uncharacterized LOC107813256 uncharacterized LOC107791025
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 11
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 4
ppo03030 DNA replication 4
ppo03460 Fanconi anemia pathway 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 12
tae03018 RNA degradation 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 9
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100804673 100797777 101263933 4344306 103633568 100262056 7465198 25489175 123187462 123051539 123424695 5716697 8078568 102592601 102613336 100826629 107813256 107791025
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