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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100267928   nucleolar protein 56 
 vvi-r.5   100267928   nucleolar protein 56 
 vvi-m.5   100267928   nucleolar protein 56 
 ath-u.5   AT3G12860   NOP56-like pre RNA processing ribonucleoprotein 
 ath-u.5   NOP56   NOP56-like pre RNA processing ribonucleoprotein 
 gma-u.5   100794470   nucleolar protein 56 
 gma-u.5   100779446   nucleolar protein 56 
 gma-u.5   100815506   nucleolar protein 56 
 ppo-u.5   7454698   nucleolar protein 56 
 ppo-u.5   7454542   nucleolar protein 56 
 mtr-u.5   11407456   nucleolar protein 56 
 sly-u.5   101250547   nucleolar protein 56 
 osa-u.5   4332851   nucleolar protein 56 
 zma-u.5   100283975   uncharacterized LOC100283975 
 zma-u.5   103639131   nucleolar protein 56 

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Top 50 coexpressed genes to 100267928 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100267928 (vvi-u.5 coexpression data)

CoexMap"100267928"


vviLOC100267928 | Entrez gene ID : 100267928      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 2 3 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03008 [list] [network] Ribosome biogenesis in eukaryotes (287 genes)
GO BP
GO CC
GO:0031428 [list] [network] box C/D methylation guide snoRNP complex  (5 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (42 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (16 genes)  IEA  
Protein XP_002283518.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for XP_002283518.1)
Subcellular
localization
TargetP
other 3,  scret 3  (predict for XP_002283518.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100267928
vvi-r.5
for
100267928
vvi-m.5
for
100267928
ath-u.5
for
AT3G12860
ath-u.5
for
NOP56
gma-u.5
for
100794470
gma-u.5
for
100779446
gma-u.5
for
100815506
ppo-u.5
for
7454698
ppo-u.5
for
7454542
mtr-u.5
for
11407456
sly-u.5
for
101250547
osa-u.5
for
4332851
zma-u.5
for
100283975
zma-u.5
for
103639131


Ortholog ID: 3450
Species vvi ath ath gma gma bra ppo ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100267928 NOP56 AT3G12860 LOC100794470 LOC100815506 LOC103859472 LOC7454542 LOC7454698 LOC11407456 LOC107912088 LOC107941045 LOC106436725 LOC106429072 LOC102628911 LOC101250547 LOC102580709 LOC107825975 LOC107763606 LOC4332851 LOC100283975 LOC103639131 LOC123066934 LOC123182958 LOC123424859 LOC123449455 LOC8072268 LOC8082289 LOC100831411 LOC100822510 CHLRE_12g525200v5
Function* nucleolar protein 56 NOP56-like pre RNA processing ribonucleoprotein NOP56-like pre RNA processing ribonucleoprotein nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56-like nucleolar protein 56-like nucleolar protein 56 nucleolar protein 56-like nucleolar protein 56-like nucleolar protein 56 nucleolar protein 56 uncharacterized LOC100283975 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56-like nucleolar protein 56-like nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 nucleolar protein 56 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100267928 842063 820468 100794470 100815506 103859472 7454542 7454698 11407456 107912088 107941045 106436725 106429072 102628911 101250547 102580709 107825975 107763606 4332851 100283975 103639131 123066934 123182958 123424859 123449455 8072268 8082289 100831411 100822510 5722505
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