ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100273080	uncharacterized LOC100273080
zma-r.6	100273080	uncharacterized LOC100273080
zma-m.5	100273080	uncharacterized LOC100273080
zma-u.5	100194136	NPL4 family
osa-u.5	4325451	NPL4-like protein
ath-u.5	AT2G47970	Nuclear pore localization protein NPL4
ath-u.5	NPL41	NPL4-like protein 1
gma-u.5	100811623	NPL4-like protein 1
gma-u.5	100779549	NPL4-like protein 1
sly-u.5	101248688	NPL4-like protein 2
vvi-u.5	100242502	NPL4-like protein 2
ppo-u.5	7481454	NPL4-like protein 1
ppo-u.5	7466262	NPL4-like protein 1
mtr-u.5	25499572	NPL4-like protein 1

functional annotation

KEGG

zma04141 [list] [network] Protein processing in endoplasmic reticulum (284 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(319 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3371 genes)

IEA

GO MF

GO:0031625 [list] [network] ubiquitin protein ligase binding	(24 genes)	IEA
GO:0043130 [list] [network] ubiquitin binding	(72 genes)	IEA

Protein

NP_001141001.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 3, mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_001141001.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001141001.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100273080	zma-r.6 for 100273080	zma-m.5 for 100273080	zma-u.5 for 100194136	osa-u.5 for 4325451	ath-u.5 for AT2G47970	ath-u.5 for NPL41	gma-u.5 for 100811623	gma-u.5 for 100779549	sly-u.5 for 101248688	vvi-u.5 for 100242502	ppo-u.5 for 7481454	ppo-u.5 for 7466262	mtr-u.5 for 25499572

Ortholog ID: 7975

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

NPL41

Function^*

NPL4 family

uncharacterized LOC100273080

NPL4-like protein

NPL4-like protein 1

Nuclear pore localization protein NPL4

NPL4-like protein 1

NPL4-like protein 2

NPL4-like protein 1

NPL4-like protein 2

NPL4-like protein 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma00020	Citrate cycle (TCA cycle)	2
zma00785	Lipoic acid metabolism	2
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	3
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	13
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	8
tae04141	Protein processing in endoplasmic reticulum	3
tae02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	6
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	3
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	4
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	4
gma03050	Proteasome	3
gma00020	Citrate cycle (TCA cycle)	2
gma01200	Carbon metabolism	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4
sly04120	Ubiquitin mediated proteolysis	3
sly04141	Protein processing in endoplasmic reticulum	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5
vvi01200	Carbon metabolism	3
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2
vvi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00450	Selenocompound metabolism	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	5
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7
bna00513	Various types of N-glycan biosynthesis	2
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2
sot04144	Endocytosis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	7
nta00100	Steroid biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	7
nta00100	Steroid biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100194136

100273080

8060985

4325451

123136417

123132365

123402420

100843046

825475

819409

100779549

100811623

101248688

103862741

100242502

7466262

7481454

25499572

121220107

107930150

106444956

111212232

102604311

102620569

107768545

107791083

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100273080 (zma-u.5 coexpression data)

Top 50 enrichment test to 100273080 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	2	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100273080 (zma-u.5 coexpression data)

Top 50 enrichment test to 100273080 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**