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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100273120   oxygen evolving enhancer protein 3 containing protein 
 zma-r.6   100273120   oxygen evolving enhancer protein 3 containing protein 
 sbi-r.1   8054499   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 osa-u.5   4342192   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 tae-r.2   123045656   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 tae-r.2   123053528   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 tae-r.2   123108141   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 hvu-r.1   123426904   photosynthetic NDH subunit of lumenal location 3, chloroplastic-like 
 bdi-r.1   100824324   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ath-u.5   PnsL3   PsbQ-like 1 
 gma-u.5   100814163   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 gma-u.5   100783530   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 sly-u.5   101249865   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 bra-r.6   103870981   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 bra-r.6   103850067   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 vvi-u.5   100253736   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ppo-u.5   18095888   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 mtr-u.5   11405533   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ghi-r.1   107918496   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ghi-r.1   107895199   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 bna-r.1   106434320   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 bna-r.1   106433439   photosynthetic NDH subunit of lumenal location 3, chloroplastic-like 
 bna-r.1   125587604   photosynthetic NDH subunit of lumenal location 3, chloroplastic-like 
 sot-r.1   102584293   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 cit-r.1   102610576   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 nta-r.1   107780377   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 nta-r.1   107770826   photosynthetic NDH subunit of lumenal location 3, chloroplastic-like 

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Top 50 coexpressed genes to 100273120 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100273120 (zma-u.5 coexpression data)

CoexMap"100273120"


zmaLOC100273120 | Entrez gene ID : 100273120    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 1 1 3 1 1 1 2 1 2 1 1 1 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00195 [list] [network] Photosynthesis (146 genes)
GO BP
GO:0009767 [list] [network] photosynthetic electron transport chain  (29 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (149 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (32 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (33 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (803 genes)  IEA  
GO MF
GO:0005509 [list] [network] calcium ion binding  (329 genes)  IEA  
Protein NP_001141040.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_001141040.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001141040.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100273120
zma-r.6
for
100273120
sbi-r.1
for
8054499
osa-u.5
for
4342192
tae-r.2
for
123045656
tae-r.2
for
123053528
tae-r.2
for
123108141
hvu-r.1
for
123426904
bdi-r.1
for
100824324
ath-u.5
for
PnsL3
gma-u.5
for
100814163
gma-u.5
for
100783530
sly-u.5
for
101249865
bra-r.6
for
103870981
bra-r.6
for
103850067
vvi-u.5
for
100253736
ppo-u.5
for
18095888
mtr-u.5
for
11405533
ghi-r.1
for
107918496
ghi-r.1
for
107895199
bna-r.1
for
106434320
bna-r.1
for
106433439
bna-r.1
for
125587604
sot-r.1
for
102584293
cit-r.1
for
102610576
nta-r.1
for
107780377
nta-r.1
for
107770826


Ortholog ID: 8010
Species zma sbi osa tae tae tae hvu bdi ath gma gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC100273120 LOC8054499 LOC4342192 LOC123045656 LOC123108141 LOC123117358 LOC123426904 LOC100824324 PnsL3 LOC100814163 LOC100783530 LOC101249865 LOC103870981 LOC103850067 LOC100253736 LOC18095888 LOC11405533 LOC107918496 LOC107895199 LOC106434320 LOC106433439 LOC125587604 LOC102584293 LOC102610576 LOC107780377 LOC107770826
Function* oxygen evolving enhancer protein 3 containing protein photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like photosynthetic NDH subunit of lumenal location 3, chloroplastic PsbQ-like 1 photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like photosynthetic NDH subunit of lumenal location 3, chloroplastic-like photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 3
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi01240 Biosynthesis of cofactors 3
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00380 Tryptophan metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 4
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra00195 Photosynthesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 5
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 3
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna00195 Photosynthesis 5
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit00195 Photosynthesis 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
nta00195 Photosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100273120 8054499 4342192 123045656 123108141 123117358 123426904 100824324 821143 100814163 100783530 101249865 103870981 103850067 100253736 18095888 11405533 107918496 107895199 106434320 106433439 125587604 102584293 102610576 107780377 107770826
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