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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18095888   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ppo-r.4   18095888   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 gma-u.5   100814163   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 gma-u.5   100783530   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 mtr-u.5   11405533   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 ath-u.5   PnsL3   PsbQ-like 1 
 vvi-u.5   100253736   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 sly-u.5   101249865   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 osa-u.5   4342192   photosynthetic NDH subunit of lumenal location 3, chloroplastic 
 zma-u.5   100273120   oxygen evolving enhancer protein 3 containing protein 

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Top 50 coexpressed genes to 18095888 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18095888 (ppo-u.5 coexpression data)

CoexMap"18095888"


ppoLOC18095888 | Entrez gene ID : 18095888    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00195 [list] [network] Photosynthesis (104 genes)
GO BP
GO:0009767 [list] [network] photosynthetic electron transport chain  (26 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (119 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (22 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (39 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (49 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0005509 [list] [network] calcium ion binding  (301 genes)  IEA  
Protein XP_006370609.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_006370609.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_006370609.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18095888

.
ppo-r.4
for
18095888

.
gma-u.5
for
100814163

.
gma-u.5
for
100783530

.
mtr-u.5
for
11405533

.
ath-u.5
for
PnsL3

.
vvi-u.5
for
100253736

.
sly-u.5
for
101249865

.
osa-u.5
for
4342192

.
zma-u.5
for
100273120

.


Ortholog ID: 8010
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol PnsL3 LOC100814163 LOC100783530 LOC101249865 LOC4342192 LOC100273120 LOC103870981 LOC103850067 LOC100253736 LOC18095888 LOC11405533 LOC123045656 LOC123108141 LOC123426904 LOC107895199 LOC107918496 LOC106434320 LOC125587604 LOC8054499 LOC102584293 LOC102610576 LOC100824324 LOC107780377 LOC107770826
Function* PsbQ-like 1 photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic oxygen evolving enhancer protein 3 containing protein photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic photosynthetic NDH subunit of lumenal location 3, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 3
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra00195 Photosynthesis 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00380 Tryptophan metabolism 2
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00710 Carbon fixation by Calvin cycle 6
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00195 Photosynthesis 4
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 5
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna00195 Photosynthesis 5
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi01240 Biosynthesis of cofactors 3
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit00195 Photosynthesis 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 4
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
nta00195 Photosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821143 100814163 100783530 101249865 4342192 100273120 103870981 103850067 100253736 18095888 11405533 123045656 123108141 123426904 107895199 107918496 106434320 125587604 8054499 102584293 102610576 100824324 107780377 107770826
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