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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100276166   uncharacterized LOC100276166 
 zma-r.6   100276166   uncharacterized LOC100276166 
 zma-u.5   103646558   uncharacterized LOC103646558 
 zma-u.5   100278828   uncharacterized LOC100278828 
 ath-u.5   AT3G03460   mediator of RNA polymerase II transcription subunit-like protein 
 ath-u.5   AT5G17510   mediator of RNA polymerase II transcription subunit-like protein 
 gma-u.5   100813084   probable E3 ubiquitin-protein ligase bre1 
 gma-u.5   100793492   probable E3 ubiquitin-protein ligase bre1 
 sly-u.5   101261996   uncharacterized LOC101261996 
 vvi-u.5   100249418   uncharacterized LOC100249418 
 ppo-u.5   7465623   uncharacterized LOC7465623 
 ppo-u.5   7459201   uncharacterized LOC7459201 
 mtr-u.5   25479439   transcription factor SPT20 homolog 

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Top 50 coexpressed genes to 100276166 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100276166 (zma-u.5 coexpression data)

CoexMap"100276166"


zmaLOC100276166 | Entrez gene ID : 100276166      
Species zma ath gma sly vvi ppo mtr sbi nta bra osa cre cit hvu bdi sot tae bna ghi
Paralog 4 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (256 genes)  IEA  
GO CC
GO:0016514 [list] [network] SWI/SNF complex  (4 genes)  IEA  
GO MF
Protein NP_001143489.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001143489.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001143489.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100276166

.
zma-r.6
for
100276166

.
zma-u.5
for
103646558

.
zma-u.5
for
100278828

.
ath-u.5
for
AT3G03460

.
ath-u.5
for
AT5G17510

.
gma-u.5
for
100813084

.
gma-u.5
for
100793492

.
sly-u.5
for
101261996

.
vvi-u.5
for
100249418

.
ppo-u.5
for
7465623

.
ppo-u.5
for
7459201

.
mtr-u.5
for
25479439

.


Ortholog ID: 3929
Species ath ath gma gma sly zma zma bra bra vvi ppo ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G03460 AT5G17510 LOC100813084 LOC100793492 LOC101261996 LOC100278828 LOC103646558 LOC103833180 LOC103844231 LOC100249418 LOC7459201 LOC7465623 LOC25479439 LOC123110924 LOC123452164 LOC107950658 LOC107919987 LOC106387733 LOC125606986 CHLRE_17g715100v5 LOC8063240 LOC102592223 LOC102611901 LOC100827606 LOC107804691 LOC107813252
Function* mediator of RNA polymerase II transcription subunit-like protein mediator of RNA polymerase II transcription subunit-like protein probable E3 ubiquitin-protein ligase bre1 probable E3 ubiquitin-protein ligase bre1 uncharacterized LOC101261996 uncharacterized LOC100278828 uncharacterized LOC103646558 putative mediator of RNA polymerase II transcription subunit 26 putative mediator of RNA polymerase II transcription subunit 12 uncharacterized LOC100249418 uncharacterized LOC7459201 uncharacterized LOC7465623 transcription factor SPT20 homolog uncharacterized LOC123110924 cell division protein FtsZ 1 putative mediator of RNA polymerase II transcription subunit 26 mastermind-like protein 2 myb-like protein P putative mediator of RNA polymerase II transcription subunit 12 uncharacterized protein transcription factor SPT20 homolog bromodomain-containing protein DDB_G0280777 uncharacterized LOC102611901 general transcriptional corepressor CYC8 uncharacterized LOC107804691 uncharacterized LOC107813252
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma04120 Ubiquitin mediated proteolysis 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00941 Flavonoid biosynthesis 8
bra04712 Circadian rhythm - plant 3
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 7
tae04820 Cytoskeleton in muscle cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03015 mRNA surveillance pathway 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi00020 Citrate cycle (TCA cycle) 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 5
bdi04144 Endocytosis 3
bdi03040 Spliceosome 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821252 831617 100813084 100793492 101261996 100278828 103646558 103833180 103844231 100249418 7459201 7465623 25479439 123110924 123452164 107950658 107919987 106387733 125606986 5725995 8063240 102592223 102611901 100827606 107804691 107813252
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