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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100277394   what's this factor1 
 zma-r.6   100277394   what's this factor1 
 sbi-r.1   8074619   protein ROOT PRIMORDIUM DEFECTIVE 1 
 osa-u.5   4339664   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 tae-r.2   123069067   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   101290653   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 tae-r.2   123147309   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 hvu-r.1   123451077   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bdi-r.1   100834907   protein WHAT'S THIS FACTOR 1 homolog 
 ath-u.5   WTF1   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100815794   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 gma-u.5   100810556   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sly-u.5   101244535   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bra-r.6   103836865   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 vvi-u.5   100248200   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   18096373   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7494144   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   11424498   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107954498   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ghi-r.1   107952946   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106365639   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106365735   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 cit-r.1   102615771   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 cit-r.1   127901018   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 nta-r.1   107793802   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 nta-r.1   107760322   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 

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Top 50 coexpressed genes to 100277394 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100277394 (zma-u.5 coexpression data)

CoexMap"100277394"


zmaLOC100277394 | Entrez gene ID : 100277394      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna cit nta cre sot
Paralog 2 1 1 3 1 1 1 2 1 1 1 2 1 2 2 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001144434.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001144434.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_001144434.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100277394
zma-r.6
for
100277394
sbi-r.1
for
8074619
osa-u.5
for
4339664
tae-r.2
for
123069067
tae-r.2
for
101290653
tae-r.2
for
123147309
hvu-r.1
for
123451077
bdi-r.1
for
100834907
ath-u.5
for
WTF1
gma-u.5
for
100815794
gma-u.5
for
100810556
sly-u.5
for
101244535
bra-r.6
for
103836865
vvi-u.5
for
100248200
ppo-u.5
for
18096373
ppo-u.5
for
7494144
mtr-u.5
for
11424498
ghi-r.1
for
107954498
ghi-r.1
for
107952946
bna-r.1
for
106365639
bna-r.1
for
106365735
cit-r.1
for
102615771
cit-r.1
for
127901018
nta-r.1
for
107793802
nta-r.1
for
107760322


Ortholog ID: 9902
Species zma sbi osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna cit cit nta nta
Symbol LOC100277394 LOC8074619 LOC4339664 LOC123069067 LOC101290653 LOC123147309 LOC123451077 LOC100834907 WTF1 LOC100815794 LOC100810556 LOC101244535 LOC103836865 LOC100248200 LOC18096373 LOC7494144 LOC11424498 LOC107954498 LOC107952946 LOC106365639 LOC106365735 LOC102615771 LOC127901018 LOC107793802 LOC107760322
Function* what's this factor1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00740 Riboflavin metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 3
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100277394 8074619 4339664 123069067 101290653 123147309 123451077 100834907 6240517 100815794 100810556 101244535 103836865 100248200 18096373 7494144 11424498 107954498 107952946 106365639 106365735 102615771 127901018 107793802 107760322
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